Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2215 ATGTTGAACCGCGCGTCAAATGTTTCGGCCGAAGTGGTTGGTTCGGGTGAGACTGAGGATGAGCTGTATGAGCAGCTGTGGAAGGCTTGTGCGGGACCACTGGTGGATGTTCCTTGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGTCACATGGAGCAAtTAGAGGCTTCAACGAACCAGGAACTGAATCAGAGGATTCCTCTGCTGAAGCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCACAGATCACTTTGGTTCCAGAATCTAATCAAGATGAGCCTACAAGTGCTGATCCGTGCACTGCTGAATCTCCAAGGGCACCGCTTCACTCGTTCTGCAAGGTCTTGACTGCTTCAGACACCAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACCGAATGCCTTCCTGCGTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTCGCAAAGGATCTCCATGGTTATGAATGGCGCTTTAAGCATatatttagagGTCAGCCACGCAGACACTTGCTCACGACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGAACAATGGGGAATTACGTGTTGGGGTGAGACGTCTAGCTCATCAGGCAAGTAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCGTAGGCGTGAACAAGTATTTGGAGGCTATGGACAACAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTCGGAGTGGAAGATATTTCTCCTCATTGGATAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACATGTAGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTCGTTGCTTCTACACCCTCAGTTCAACCTACTATAGTAAAGACTAAAAGGCCTCGACCACCCAGCGAAATTCCAGATGTTGACACAACATCTGCTGCTTCTGTTTTCTGGGATGCTGGCCTGACACAGGCTGATATGACACAAGTTAATGTTTTGGCCGAAAGCAAACGGAATGACAATACTGGTATGTGGCATCATATGCAAACTGACTTGAATAGTAAAAGCAACAGCATCAACACCATGTTAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGCTGTCCATCTCATTTGTTTCAGGACACAACAGATGATAGCAAGAGTGTCTCGGCTTGGCCTGTTTCAAAGCTTCACTCATCCAGATTGAACAATGATCATGCCCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACTAGTTGCCGATTGTTTGGAATTGAGCTTATTGACCATTCTAGGAACTCATCTGCTATAGAGAAGGCATCTGTGCATGCAGTAAATTTATCCAAAGTTACTACTGAAGGCTGTACCAGCACCTTGTCCCGAACCGATGCTGGCCATAAGCCCGATGTGCCAAAGGCTTCTTCCAAGGAGGGGAAACAAGAACAGCAGCAAGTATCACAAAAGGAGACTCAGAGCAAGCAAATTTGTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGATATGATCAGCTTATAAATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCAACACAGGAATAAGTGGGAAATAGTCTTCACTGATGATGAAGGGGACATGATGCTTGTGGGAGATGATCCATGGCCCGAATTCTGTAATATGGTGAAAAGAATCTTCATTTGTTCCAGCCAAGATGTGAAGAAGATGAGTTCTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTGTAATAAGCTCAGACACAACTGAAACCTGA 2076 0.4586 MLNRASNVSAEVVGSGETEDELYEQLWKACAGPLVDVPCVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSADPCTAESPRAPLHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLAHQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVGVNKYLEAMDNKFSVGMRFKMRFEGDDSAETDKRFSGTIVGVEDISPHWINSKWRSLKVQWDEHVAVPRPDRVSPWEIEPFVASTPSVQPTIVKTKRPRPPSEIPDVDTTSAASVFWDAGLTQADMTQVNVLAESKRNDNTGMWHHMQTDLNSKSNSINTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSAWPVSKLHSSRLNNDHALDQVDKESKVETATSCRLFGIELIDHSRNSSAIEKASVHAVNLSKVTTEGCTSTLSRTDAGHKPDVPKASSKEGKQEQQQVSQKETQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYDQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMSSGSKLPISSVEDGTVISSDTTET 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2215 691 Gene3D - 124 228 IPR015300 -
Ssu4g2215 691 SMART B3_2 127 229 IPR003340 GO:0003677
Ssu4g2215 691 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu4g2215 691 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Ssu4g2215 691 Gene3D - 288 363 - -
Ssu4g2215 691 PANTHER AUXIN RESPONSE FACTOR 16 680 - -
Ssu4g2215 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu4g2215 691 SUPERFAMILY CAD & PB1 domains 582 656 - -
Ssu4g2215 691 MobiDBLite consensus disorder prediction 538 580 - -
Ssu4g2215 691 MobiDBLite consensus disorder prediction 560 580 - -
Ssu4g2215 691 CDD B3_DNA 125 227 IPR003340 GO:0003677
Ssu4g2215 691 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Ssu4g2215 691 Pfam AUX/IAA family 623 664 IPR033389 -
Ssu4g2215 691 Pfam AUX/IAA family 560 616 IPR033389 -
Ssu4g2215 691 Gene3D - 575 668 - -
Ssu4g2215 691 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ssu4g2215 691 SUPERFAMILY DNA-binding pseudobarrel domain 119 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2215 Ssu-Chr4 51870326 51874209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2215 22 673 B3 DNA Binding Superfamily AT4G23980 58.182 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu4g2215 AUX_IAA 1.2e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2215 K14486 - gmx:100803911 1230.7