Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2213 ATGAGCACGATTTCTAATTTGTGTTgcaattttcacattttttttctaattgctCTTGCACTTTTCCTACAGTTATCATCTCAGCTTGGAACCTCTCGTTCAAAGGTAGGAGTGCTTCCTGGCTTTGAAGGACCTCTTCCTTTTGAACTCGAAACAGGGTATGTGGGGTTGGGTGAAACAGATGATGACATGCAAGTGTTCTACTATTTTGTTAAGTCAGAGAACAACCCTGAAAAAGACCCTCTTATGCTTTGGCTAACTGGGGGTCCTGGTTGCTCTTCATTTTCGGGTCTTGCCTTTCAAATAGGTCCACTGGCATTCAAAACTGAGGAGTTTGATGGGAGCTTGCCAAAATTGATCTTGAGGCTGCAGTCCTGGACAAAGGTATGTAGCATTATCTTTGTAGATTTGCCTTTTGGAACTGGCTTCTCGTATGCAAAAAATCTCACTGCTCAACGGAGTGACTGGAAGTTAGTTCACCATACCCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCAGAATTTCtttcaaatgaattttacaTGGGAGCTGATTCATATTCTGGCATTCCTGCCCCTGCTATTgttcaagaaatttcaaatgGAAATGAAATAGGTCTCCAACCATGGATAAATCTCCAGGGATATCTGCTAGGGAACCCCATAACAACacgaaaagaaataaatgagcaAATCCCATTTGCTCATGGAATGGGACTTATTTCTGATGAACTCTATGCGTCACTGCAGAGAAATTGTAAAGGAGAGTATAAGGATATTGATTCCAGAAATGAATTGTGTTTAAGAGATCTCAACTACTATGATGAGTGCCTTTCAGGAATTAATGTGTTTTACATTCTGGATCGCTATTGCAAAGATGATTCACCTAAGAAACATGAAGCTCTGTGGAGATCTCTGACTCAGAAGTTTGAGGACTCTCTTAATTCTCATCTCAGAGTGCCAGACATAAGATGTCAAATTTATGGTTTTTTCCTTGCCACTCAATGGGCCAATGATGAGAGTGTTCGCAAGTCGCTGTATATTCGAGAgGGAACTATAGGCAAATGGGAACGTTGTTACACTACTGATTTTGAGCAGCAGATCTCTAGTAGCTTCGAGTTTCATGTAAATCTCAGTGCAAAAGGCTACCGTTCTTTAATATACAGTGGGGATCATGATGCAGTTGTTCCTTTCATGTCAACTCAAGCATGGATTAGAGCTCTAAACTACTCCATTGTGGAAGATTGGAGGCCATGGCTTGTAAAAGGCCAAGTTGCAGGATACACAAGGACTTATTCGAATCAAATGACATTTGCAACTGTGAAGGGTTCAGGACATACAGCTCCTGAGTACAAACCTGAGGAAGGTTTTGCCATGTTCACTAGGTGGATAGCTAATGTGCCTTTGTAA 1413 0.3935 MSTISNLCCNFHIFFLIALALFLQLSSQLGTSRSKVGVLPGFEGPLPFELETGYVGLGETDDDMQVFYYFVKSENNPEKDPLMLWLTGGPGCSSFSGLAFQIGPLAFKTEEFDGSLPKLILRLQSWTKVCSIIFVDLPFGTGFSYAKNLTAQRSDWKLVHHTHQFLRKWLIDHPEFLSNEFYMGADSYSGIPAPAIVQEISNGNEIGLQPWINLQGYLLGNPITTRKEINEQIPFAHGMGLISDELYASLQRNCKGEYKDIDSRNELCLRDLNYYDECLSGINVFYILDRYCKDDSPKKHEALWRSLTQKFEDSLNSHLRVPDIRCQIYGFFLATQWANDESVRKSLYIREGTIGKWERCYTTDFEQQISSSFEFHVNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVEDWRPWLVKGQVAGYTRTYSNQMTFATVKGSGHTAPEYKPEEGFAMFTRWIANVPL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2213 470 Pfam Serine carboxypeptidase 40 467 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 Gene3D alpha/beta hydrolase 43 469 IPR029058 -
Ssu4g2213 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 17 468 - -
Ssu4g2213 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 468 IPR001563 GO:0004185|GO:0006508
Ssu4g2213 470 SUPERFAMILY alpha/beta-Hydrolases 39 469 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2213 Ssu-Chr4 51827469 51832522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2213 32 59 Calmodulin-binding Proteins AT2G22960 71.429 3.22e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2213 K16296 - gmx:100780069 857.825