Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2212 ATGCTTCTAATTGCTCTTGCACTTTGCCTTCAGTTATCATGTCAGCTTGGAACCTCTGGCTCCAAGGTAGAAGTGCTTCCTGGCTTTGAAGGACCTCTTCCTTTTGAACTCGAAACAGGGTATGTGGGACTGGGAGAAACAGATGATGACATGCAAGTGTTCTACTACTTCATTAAGTCAGAGACCAACCCTGAAAAAGACCCTCTTATGCTTTGGCTAACTGGGGGTCCTGGTTGCTCTTCGTTTTCGGGTCTTGCCTTTGAAATAGGTCCACTGGCATTCAAAACTGAGGAGTTTGATGGAAGCTTGCCAAAATTGATCTTGAGGCCGCAGTCCTGGACGAAGGTATGTGGCATTATCTTTGTAGATTTGCCTTTTGGAACTGGCTTCTCGTATGCAAAAAATCTCACTGCTCAACGGAGTGACTGGAAGTTAGTTCACGATACCCATCAATTTCTTAGGAAGTGGCTGATTGATCTCCCAGAATTTCtttcaaatgaattttacaTGGGAGCTGATTCATATTCTGGCATTCCTGCCCCTGCTATTgttcaagaaatttcaaatgGAAATGAAATAGGTCTCCAACCACGGATAAATCTCCAGGGATATCTGCTAGGGAACCCCATAACAACacgaaaagaaataaatgagcaAATCCCATTTGCTCATGGAATGGGACTTATTTCTGATGAACTCTATGCGTCACTGCAGAGAAATTGTAAAGGAGAGTATAAGGATATTGATTCCAGAAATGAATTGTGTTTAAGAGATCTCAACTACTATGATGAGTGCCTTTCAGGAATTAATGTGTTTTACATTCTGGATCGCTGTAGCAAAGATGATTCACCGAAGAAACATGAAGCTCTGTGGAGGAGATCTATGACTCAGAAGTTTGAGGACTCTCTTAATTCTCATTTCAGAGTGCCAGACATAAGATGTCAAatttataaatatttcctTGCCACTCAATGGGCCAATGATGAGAGCGTTCGCAAGTTGCTGCATATTCGACAGGGAACTATAGGCAAATGGGAACGTTGTTACACTACCGAATTTGAGTATCAGATCTCTAGTAGCTTCGAGTTTCATGTAAATCTCAGTGCAAAAGGCTACCGTTCTTTAATATACAGTGGGGATCATGATGCAGTTGTTCCTTTCATGTCAACTCAAGCATGGATTAGGGCTCTAAACTACTCCATTGTGGAAGATTGGAGACCATGGCTTGGTTCAGGACATACAGCTTCCGAGTGCAAGCCTGAGGAAGGTTTTGCCATGTTCACTAGGTGGATAGCTAAGAGAATGGCCTCATAA 1314 0.4094 MLLIALALCLQLSCQLGTSGSKVEVLPGFEGPLPFELETGYVGLGETDDDMQVFYYFIKSETNPEKDPLMLWLTGGPGCSSFSGLAFEIGPLAFKTEEFDGSLPKLILRPQSWTKVCGIIFVDLPFGTGFSYAKNLTAQRSDWKLVHDTHQFLRKWLIDLPEFLSNEFYMGADSYSGIPAPAIVQEISNGNEIGLQPRINLQGYLLGNPITTRKEINEQIPFAHGMGLISDELYASLQRNCKGEYKDIDSRNELCLRDLNYYDECLSGINVFYILDRCSKDDSPKKHEALWRRSMTQKFEDSLNSHFRVPDIRCQIYKYFLATQWANDESVRKLLHIRQGTIGKWERCYTTEFEYQISSSFEFHVNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVEDWRPWLGSGHTASECKPEEGFAMFTRWIAKRMAS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2212 437 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 409 IPR001563 GO:0004185|GO:0006508
Ssu4g2212 437 SUPERFAMILY alpha/beta-Hydrolases 26 433 IPR029058 -
Ssu4g2212 437 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 6 409 - -
Ssu4g2212 437 Pfam Serine carboxypeptidase 27 416 IPR001563 GO:0004185|GO:0006508
Ssu4g2212 437 Gene3D alpha/beta hydrolase 29 437 IPR029058 -
Ssu4g2212 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Ssu4g2212 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 181 IPR001563 GO:0004185|GO:0006508
Ssu4g2212 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2212 Ssu-Chr4 51698138 51706049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2212 19 46 Calmodulin-binding Proteins AT2G22960 75.000 1.18e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2212 K16296 - gmx:100780069 768.844