Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2197 ATGGAACAGAATCAATGTTGGTCAAAGAGGAAGTACTCTCTGAGCTCTAGTCTCAGTTCACCAACAAACCCTTCCTATGGTGATTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTTGGTGGCTGCATATGGCCACCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCTTCTAGCCCCCACAATGAAATTCTATGTCATGACCTTGAAACCCACCTCCATAAGCCAGTTCAAAGTCCTTGTGCTTCTTTGGGTGGTTACCTATACCCTTCTCCTGTTTGTGGATTGGCTTGTAAAAAATCTAACCCTAATTCTGATCCTGATTTTCTTGCTTCACATTTATCATCACCCTCACCTTCCAAAGCCCTATTAGCTCCATCAGTTAATGGTAGCTGTAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTTTCCACAACATTTCCCCAGTCCATAATTCTTCTGAATCATGGCCAAATTTACCTGAAGATCACAGATTATATTCATGTAAGTTCCACCTTGAAGCTGATACTAAGAAACCCTCCAAGGGAATAATGGATTCTAGGTGTCGGGGTAATAAGGGGGATAATGATGATACTGATGGGGCTATGAGGTTGAATTCAGTTGTGAATAAAACTCACCCATGTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTTCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTTTCCCCAAAGTCAAGCTCAGTTGATACACATCAAGTGCAGCCAAAGATGTTTGAATTTAGCCCTACCTCAATGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAAGTCCAAGTTGGTGGGCTTTGTCTTCTTTTGGGGTTGTGAGATGGGTAGGTCTGATATGAGCAGAGAGAAATCAGTGAAGGTTTGGGTTGCAGTGGCAGAAGTGCACATGGGCATAAACTGTCGTTTCTCTATTCACTTGAAGGGTTACATAGAGTAG 1080 0.4231 MEQNQCWSKRKYSLSSSLSSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETHLHKPVQSPCASLGGYLYPSPVCGLACKKSNPNSDPDFLASHLSSPSPSKALLAPSVNGSCREETMIPLYDSSIFHNISPVHNSSESWPNLPEDHRLYSCKFHLEADTKKPSKGIMDSRCRGNKGDNDDTDGAMRLNSVVNKTHPCLQFESTKEADHISFKKRKTDASSTLFSPKSSSVDTHQVQPKMFEFSPTSMEELDLELRLGNKSKLVGFVFFWGCEMGRSDMSREKSVKVWVAVAEVHMGINCRFSIHLKGYIE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2197 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Ssu4g2197 359 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Ssu4g2197 359 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Ssu4g2197 359 Gene3D Classic Zinc Finger 50 101 - -
Ssu4g2197 359 PANTHER OS07G0101800 PROTEIN 1 310 - -
Ssu4g2197 359 Pfam C2H2-type zinc finger 53 77 - -
Ssu4g2197 359 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 310 - -
Ssu4g2197 359 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2197 Ssu-Chr4 51102498 51105704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2197 29 84 C2H2 Transcription Factor Family AT2G37740 82.143 2.42e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g2197 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2197 - - gmx:100801427 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1269 3 31084638 31085388 Ssu4g2197 4 51102498 51105704 ECH
Ssu4g2197 4 51102498 51105704 Ssu4g2197 4 51102498 51105704 ECH