Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2189 ATGGTCAACATGCTCCTCCAACTCTTGTCTTTGTTGCTGTTCCTTCTGATCCCAGTTTCATCTCAGCCTAACCAGCTCTTCTATGCTGGATTCAAGGGTGTTGGCAACAACATGACCCTTAATGGGGTGGCAGAAATAGAGCAAAATGGGATACTGAAACTCACAAATGATTCCAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTTTTCAGTTCAGGAACTCTAGCAATGGTAAagctttctccttttcttcctcttttgctTTGGTTATTGTTCCTGAGTATCCAAAGCTCGGAGGGCATGGTCTTGCTTTTACAATTGCTACTTCTAAGGATCTTAAGGCCCTTCCAAGCCAATATCTTGGTCTTCTTAACTCAAGTGACATAGGGAACTTCTCCAACCACCTCTTTGCTGTTGAGTTTGACACAGCCCAAGATTTTGAGTTTGGGGACATCAATGACAACCATGTTGGAATTGACATCAATAGCTTGGCCTCCAATGCTTCTGCCCCTGCAGGTTACTACACTGGGGATGATGATTCAACCAAACAGAATCTCACTCTCAAAAGTGGGAAACCAATTCTTGCTTGGGTTGATTATGATTCTGCTCAAAGTGTGATCCATGTCACAATTTCTGCATCTTCTACCAAACCCAAAAGGCCACTCTTGTCCTTTCCTGTGGATCTTTCACCAATCTTTAAGGATTCCATGTATGTTGGGTTCTCTGCATCAACAGGGTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCTCCACCCCTTGATCTCTCATCTCTCCCACAGCTTCCAGGGCCAAAGAAGAAACACACATCTCTGATAATTGGGGTTTCAGTCTCTTGTGTTGTTCTTGCACTGTGTGCTATCTTACTTGGCATCTACATGTACAGAAGATACAAGAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGGCCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGATGCTTGGACAAGGGGGGTTTGGTAGAGTTTACAAAGGGACATTACCAAATTCCAATACCCAAGTTGCTGTTAAGAGAATTTCACATGACTCCAAACAAGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCCGGCTTCGCCATCGGAATTTGGTTCAGTTGCTGGGGTGGTGTCGCCGCCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACTTGTTTGATGAGCCAAAAACAATCCTAAGTTGGGAGCAAAGGTTTAAGGTCATCAAGGATGTTGCTTCAGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGTGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGACTGTATGAACATGGGGCTAACCCAAGTACCACAAGGGTGGTGGGGACCTTGGGCTATTTGGCACCTGAGTTGCCTAGGACAGGGAAGGCCACTCCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTAGAGGTGGCATGTGGGCTCAGACCACTTGAGCCAAAGGCATTGCCAgaaaatttggttttggttgatTGTGTATGGAACAAATACAAACAAGGGAGAATACTTGATGTGGTGGACCCTAAACTAAATGGTGTTTTTAATGAAAGAGACGTGCTCATGGTGCTGAAATTGGGGCTTTTGTGCTCAAATGGTGCACCTGCTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTTTTGGATGGAGAAGTTGGTTTGCCAGATGAGTTGAGAAAGCCAGAAGAGGTAGGTTACCAGGAGGGTTTTGATGAATTCTTGCACTCACATGAACCTTCTTCCTTTGATCAGATGAGCACAAGTTCCCATGGTAGAAACAGAGACATGGATGCTAGTTTTCCTTCTTTTACTGATACATCTCTTTATGGTAGAGGAGAAACAGGTGATTATCTACATTGTACTTAG 2061 0.4367 MVNMLLQLLSLLLFLLIPVSSQPNQLFYAGFKGVGNNMTLNGVAEIEQNGILKLTNDSSKVMGHAFYPTAFQFRNSSNGKAFSFSSSFALVIVPEYPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSDIGNFSNHLFAVEFDTAQDFEFGDINDNHVGIDINSLASNASAPAGYYTGDDDSTKQNLTLKSGKPILAWVDYDSAQSVIHVTISASSTKPKRPLLSFPVDLSPIFKDSMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPGPKKKHTSLIIGVSVSCVVLALCAILLGIYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKEMLGQGGFGRVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKTILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATPSSDVFAFGALLLEVACGLRPLEPKALPENLVLVDCVWNKYKQGRILDVVDPKLNGVFNERDVLMVLKLGLLCSNGAPAARPSMRQVVRFLDGEVGLPDELRKPEEVGYQEGFDEFLHSHEPSSFDQMSTSSHGRNRDMDASFPSFTDTSLYGRGETGDYLHCT 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2189 686 Pfam Protein kinase domain 343 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2189 686 CDD STKc_IRAK 349 615 - -
Ssu4g2189 686 Gene3D - 25 270 - -
Ssu4g2189 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 12 267 IPR013320 -
Ssu4g2189 686 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Ssu4g2189 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Ssu4g2189 686 MobiDBLite consensus disorder prediction 642 662 - -
Ssu4g2189 686 SUPERFAMILY Protein kinase-like (PK-like) 325 640 IPR011009 -
Ssu4g2189 686 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2189 686 Pfam Legume lectin domain 27 274 IPR001220 GO:0030246
Ssu4g2189 686 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 4 667 - -
Ssu4g2189 686 CDD lectin_legume_LecRK_Arcelin_ConA 28 264 IPR001220 GO:0030246
Ssu4g2189 686 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Ssu4g2189 686 MobiDBLite consensus disorder prediction 644 662 - -
Ssu4g2189 686 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2189 686 PANTHER - 4 667 - -
Ssu4g2189 686 Gene3D Transferase(Phosphotransferase) domain 1 420 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2189 Ssu-Chr4 50707530 50709590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2189 19 677 Receptor kinase-like Gene Family AT3G55550 57.808 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu4g2189 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2189 - - gmx:100801247 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2937 6 67702088 67704091 Ssu4g2189 4 50707530 50709590 ECH
Ssu3g1273 3 31300183 31302207 Ssu4g2189 4 50707530 50709590 ECH
Ssu4g2189 4 50707530 50709590 Ssu6g2937 6 67702088 67704091 ECH
Ssu4g2189 4 50707530 50709590 Ssu4g2189 4 50707530 50709590 ECH