Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2186 atgtgtgtatatatggaTAATTTGCTATGTGATGAGGTGTGGCTATCAAGGTCTGCAAATACCTTTGAAGAAGTTGGTGACCCTGTTGCAGTCAAGAGTTATGAAGATGAAGAGTTTAAAGAGGCTTTTACAGTGTGTCTAGAGAAGGAGGTCCCTTGCATGCCCGAACCTGACTATACAAAGTACTTACACTCCAACAATTTGATTTTTCCTAGGTGTAGAGTTATTCAATGGTTTATAAAGTGTAGAAGTCGCTTTAATCTTTCTTTTGGGACAGTCTTCTTTGCTGTTAATTATCTTGATCGCTTTGTATCCATTTGTCAATGCAATGATTGGGAATACTGGATGCTTGAATTGCTTTCTATTGCATGCTTATCAATTGCCATAAAGTTCAATGAGATGTCATCACTTTCGTTGCATGAAATTCAGGTGGAGGGCTTGGACTATTCATTCCAATCAAACGTAATTTTGAAAATGGAGCTGATCATATTGAAGGCGCTGGGGTGGCGCCTTAACTCTGTGACAAATGTTGATTTCTTGGAAAATCATCTTTATGAGAAGCTTATTTCACGAGTCACTGAGCTCCTTGTCCAAGCTACTTTAGATCAGAAAATGCTGGAATTCAGGCCAAGCATTGTTGGTATATCTGCATTATGGCGCACTCTAGACCAGCTTATTTTCCACCAACATCTGATATTTAcattgcttatatttgagactcTTGAACCAAAGTCAAAAGGATGA 744 0.3683 MCVYMDNLLCDEVWLSRSANTFEEVGDPVAVKSYEDEEFKEAFTVCLEKEVPCMPEPDYTKYLHSNNLIFPRCRVIQWFIKCRSRFNLSFGTVFFAVNYLDRFVSICQCNDWEYWMLELLSIACLSIAIKFNEMSSLSLHEIQVEGLDYSFQSNVILKMELIILKALGWRLNSVTNVDFLENHLYEKLISRVTELLVQATLDQKMLEFRPSIVGISALWRTLDQLIFHQHLIFTLLIFETLEPKSKG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2186 247 Pfam Cyclin, N-terminal domain 42 172 IPR006671 -
Ssu4g2186 247 Gene3D - 56 172 - -
Ssu4g2186 247 PANTHER CYCLIN-D7-1-RELATED 30 225 - -
Ssu4g2186 247 CDD CYCLIN 72 164 IPR013763 -
Ssu4g2186 247 SMART cyclin_7 77 165 IPR013763 -
Ssu4g2186 247 Gene3D - 46 229 - -
Ssu4g2186 247 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Ssu4g2186 247 PANTHER CYCLINS 30 225 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2186 Ssu-Chr4 50625000 50627225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2186 47 218 Core Cell Cycle Gene Families AT1G70210 32.418 9.68e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2186 K18813 - gmx:100792420 322.783