Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2184 atgtgtgtatatatggaTAATTTGCTATGTGATGAGGTGTGGCTATCAAGGTCTGCAAATACCTTTGAAGAAGTTGGTGACCCTGTTGCAGTCAAGAGTTATGAAGATGAAGAGTTTAAAGAGGCTTTTACAGTGTGTCTAGAGAAGGAGGTCCCTTGCATGCCCGAACCTGACTATACAAAGTACTTACACTCCAACAATTTGATTTTTCCTAGGTGTAGAGTTATTCAATGGTTTATAAAGTGTAGAAGTCGCTTTAATCTTTCTTTTGGGACAGTCTTCTTTGCTGTTAATTATCTTGATCGCTTTGTATCCATTTGTCAATGCAATGATTGGGAATACTGGATGCTTGAATTGCTTTCTATTGCATGCTTATCAATTGCCATAAAGTTCAATGAGATGTCATCACTTTCGTTGCATGAAATTCAGGTGGAGGGCTTGGACTATTCATTCCAATCAAACGTAATTTTGAAAATGGAGCTGATCATATTGAAGGCGCTGGGGTGGCGCCTTAACTCTGTGACAAGTTATTCTTTTGTAGAAATGCTAGATGTTGATTTCTTGGAAAATCATCTTTATGAGAAGCTTATTTCACGAGTCACTGAGCTCCTTGTCCAAGCTACTTTAGATCAGAAAATGCTGGAATTCAGGCCAAGCATTGTTGGTATATCTGCATTATGGCGCACTCTAGACCAGCTATTTCCACCAACATCTGATATTTACATTGCTTATATTTTGAGACTCTTGAACCAAAGTCAAAAGAAGGTGACACGTTTTTTCTCTGATATTGCACTTACATACAATTGCACTCGCATATTTGACATGTCAAAAGGATGTTTTCCATCTACAACTGCCATGCGTGCCTTTCCCATTGGTTTGTCACTCTACCTAAAGGAGGTTCAACTTGCGCTTGGTATGTCTTGGTCAGTTGAGTTGACTAAGCAGGTTACGCTCTTTGGGCATGAATCCCTGTTGCGAACGGTCGTACTGACTGGATAG 999 0.3914 MCVYMDNLLCDEVWLSRSANTFEEVGDPVAVKSYEDEEFKEAFTVCLEKEVPCMPEPDYTKYLHSNNLIFPRCRVIQWFIKCRSRFNLSFGTVFFAVNYLDRFVSICQCNDWEYWMLELLSIACLSIAIKFNEMSSLSLHEIQVEGLDYSFQSNVILKMELIILKALGWRLNSVTSYSFVEMLDVDFLENHLYEKLISRVTELLVQATLDQKMLEFRPSIVGISALWRTLDQLFPPTSDIYIAYILRLLNQSQKKVTRFFSDIALTYNCTRIFDMSKGCFPSTTAMRAFPIGLSLYLKEVQLALGMSWSVELTKQVTLFGHESLLRTVVLTG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2184 332 CDD CYCLIN 72 164 IPR013763 -
Ssu4g2184 332 Gene3D - 44 234 - -
Ssu4g2184 332 SMART cyclin_7 77 165 IPR013763 -
Ssu4g2184 332 Gene3D - 56 172 - -
Ssu4g2184 332 PANTHER CYCLINS 30 265 IPR039361 -
Ssu4g2184 332 Pfam Cyclin, N-terminal domain 42 172 IPR006671 -
Ssu4g2184 332 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Ssu4g2184 332 PANTHER CYCLIN-D7-1-RELATED 30 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2184 Ssu-Chr4 50523063 50527780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2184 41 258 Core Cell Cycle Gene Families AT3G50070 28.311 6.44e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2184 K18813 - gmx:100792420 376.711