Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2182 atgGCTTGTTCCCGCATTCACTTCAACCTTCATCTCCCTTTCCCCTCCGATTCGGCGCAAATTCCGTCCATATGTCACTCTCCCTCTCACCTCTCTCTTTTGCTCTCACCCTTCCCTCTCTTCACAACACCAAagATCGCTTACTCCAGTGCTCCACGGCGTACGTGTGGTGCGGTGTGCTCTCACATGACTATAGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTGGTGTATGTGCCTCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTCTTAGGAATGAGCAAACTCCTTGTCCCATCTTCAGAAATGCAATGGCTGAGTTGGGAAGGCTACTATTGTATGAAGCGTCAAGGGATTGGTTGccCACTGTTTCTGGAGAGATTCAGTCACCAATGGGTGTAGCCTCTGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCTTGAGAGCAGGTCTTGCTCTTGCGGAACATGCTTCATCGATCTTGCCTGCAACAAAAACATATCATCTAGGAATAAGCAGAGATGAGGAAACTCTTCAGCCAACTATATATTTGAACAaGTTACCCGAGAAATTTCCAGAAGAATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCCCTGAGTCTCCTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCCGTCGCAGCCCCTCCGGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGgTTCATAATTCCTGGCCTTGGTGATGCTGGGGACCGCAGCTATGGTACAGATACATGA 867 0.474 MACSRIHFNLHLPFPSDSAQIPSICHSPSHLSLLLSPFPLFTTPKIAYSSAPRRTCGAVCSHMTIEEKPLSENRMLVYVPPHPLIKHWVSVLRNEQTPCPIFRNAMAELGRLLLYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLALAEHASSILPATKTYHLGISRDEETLQPTIYLNKLPEKFPEESKVFVVDPMLATGGTIVAALSLLKERGVGNKQIKVISAVAAPPALQKLSEQFPGLHVYTGIIDPEVNEKGFIIPGLGDAGDRSYGTDT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2182 288 SUPERFAMILY PRTase-like 77 285 IPR029057 -
Ssu4g2182 288 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 45 282 - -
Ssu4g2182 288 PANTHER URIDINE KINASE 45 282 - -
Ssu4g2182 288 CDD PRTases_typeI 142 262 IPR000836 -
Ssu4g2182 288 TIGRFAM upp: uracil phosphoribosyltransferase 77 286 IPR005765 GO:0004845|GO:0006223
Ssu4g2182 288 Gene3D - 65 286 IPR029057 -
Ssu4g2182 288 Pfam Uracil phosphoribosyltransferase 79 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2182 Ssu-Chr4 50413583 50425826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2182 49 288 PRT Gene Family AT3G53900 75.417 2.03e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2182 K00761 - gmx:100797953 511.146