Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2181 ATGGCGCAGGCGGCGGGGCCAAGCAGGGTGGTCGGAGACTACGTCGTGGGGAAGCAAATCGGCGAAGGGTCGTTCTCGAAGGTGTGGCACGGAAGGCACAAAGTGCACGGAACCGAGGTGGCGATAAAGGAGATCTCCATGCATCGCCTCAACAAGAAGTTGCAGGAGAGCCTCATGTCCGAGATTTACATCTTGAAGCGGATTAACCACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACATCTCGTGTTAGAGTACTGTGAAGGGGGAGATCTCTCCATGTACATTCAACAGCATGGAAGGGTACCAGAGGCAACTGCAAAGCACTTTATGCAGCAGCTGGCTGCTGGCCTACAAGTTCTTCGGGATAATAACCTTATTCATCGAGACCTGAAACCACagAATCTTCTTCTCTCTCGGAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGAAGCCTTGCTGAAACCTTGTGTGGTTCACCACTGTACATGGCTCCAGAAATCATGCAACTACAGAAGTATGATGCTAagGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTTGTTACAGGAAGAACACCTTTCACTGGAAACAATCAAATACAGTTACTACagaatattttgaaatcaacaGAATTGCGGTTTCTGTCTGATAACCCTAGTCTGAGTTCTGAATGTAAAGATTTGTGTCAGAAATTGCTACGCCGGAATCCAGTGGAACGTCTAACTTTTGAAGAATTCTTTAACCACCCATTCCTTTCTCAGAAGCAAACAGAACAGGATGAGCCATTGAGGAATAGAAGTTCTTCAAGGCTGGTTGGTGGGTTTTGTTCTACAGTGTCTGACCCTTTGAGAAGAACTGAGGAAAATTATCAAGAAGACTGCTTGCCTTTCATTCTAGAGGATGACTCTAGTGGCCCTGAGGGGAGTCTATCCTTTTCAAGGAAGAAGTCCTCAATGAAGTCTACCTATGGATTTGATCTAAATGCTAAACTAGTAGATAAAGCAGAGTCAGCATCTCCTATTTCTAATAACATAAATTGTACTTCTGGACTTGGTAGTATGACACAGAGATCTGAAAACAGTACTAATAGATTGGACAAgcataaaatttcaagaaatctCACTGATCCTCTAGAATCTCCAGAACAGATATTCACAAGTCCTTATCCAAAAGTTACGGATTCACTGGAGAATATCGATCAAGAATATGTTCTGGTGTCTGGGCCCCCTATAGATGTTTCATCTTCTTCAGTGGGTGCTTCAAGGCCCAGCCATACCCCATATCGGTCAGGTAGTTTACCCCAAGAGTCTTCTAGTACAATCACTAGACTAAGTGCTCCAATGCCAATAGTTGGTGTACCTACCAATAGCATATGCCAAATTGGAAGTTCAGGAAGTCAGGACTCTGCTCCTGGGACTTCACTTGGATCAATGGATACAGGTGATGAACAGCCATCAGCTCACTGCATGACAAGGGTGAAATCATTGCAACAGTGTGCATCTGCCATCACGGAATTAGTTAATGAAAAGatgGAGGCAGGAAAGCATCTAGAAGCATTTTCTATTCAGCTTGTAATTCTTGCAATCTGGAAGCAAGCACTGCACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCAAGATATAGAAGGAGCACTAGCAGGAAGCATGGTAGTCCTGATTCGGAAGAATGCCTTGATGGAAACACCCTAGGGCCAAAGGATATATTATCTCAAATTGAAAGTGAATTTTTGAGGGAATTTGAGCATGCAGAAGAACTTGCCAAGACTATTGAGCCAGGAAACACAGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCCCTTGCTTTTGGAAGACATGGGGGTGTAGAAGAGCTCATGGGTGAAATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTTCGTTTGTTAGTTTTCCTTCTAGTGGAAGGACCATCCCTGATACTTAATCCTCCATTTTCACTGACAAACACAGACCGTTACAGGCTTCGGACTTACATTGATTTTCTTAATAACAGGCAAGGTTATTCAAGGTCTCAGCGAATGGCACTACTGAAATGTGATGACAGTCAAGGTTTCCTTAAGGAAAAGTTTTAG 2202 0.4296 MAQAAGPSRVVGDYVVGKQIGEGSFSKVWHGRHKVHGTEVAIKEISMHRLNKKLQESLMSEIYILKRINHPNIICLHDIIQVPGKIHLVLEYCEGGDLSMYIQQHGRVPEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDEKSVLKIADFGFARSLQPRSLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELRFLSDNPSLSSECKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQTEQDEPLRNRSSSRLVGGFCSTVSDPLRRTEENYQEDCLPFILEDDSSGPEGSLSFSRKKSSMKSTYGFDLNAKLVDKAESASPISNNINCTSGLGSMTQRSENSTNRLDKHKISRNLTDPLESPEQIFTSPYPKVTDSLENIDQEYVLVSGPPIDVSSSSVGASRPSHTPYRSGSLPQESSSTITRLSAPMPIVGVPTNSICQIGSSGSQDSAPGTSLGSMDTGDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRRSTSRKHGSPDSEECLDGNTLGPKDILSQIESEFLREFEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRTYIDFLNNRQGYSRSQRMALLKCDDSQGFLKEKF 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2181 733 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2181 733 MobiDBLite consensus disorder prediction 476 506 - -
Ssu4g2181 733 CDD STKc_ATG1_ULK_like 20 270 - -
Ssu4g2181 733 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 1 707 IPR045269 GO:0004674|GO:0006914
Ssu4g2181 733 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1B 1 707 - -
Ssu4g2181 733 Gene3D Transferase(Phosphotransferase) domain 1 6 313 - -
Ssu4g2181 733 Pfam Protein kinase domain 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2181 733 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Ssu4g2181 733 MobiDBLite consensus disorder prediction 561 598 - -
Ssu4g2181 733 MobiDBLite consensus disorder prediction 433 456 - -
Ssu4g2181 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Ssu4g2181 733 SUPERFAMILY Protein kinase-like (PK-like) 10 457 IPR011009 -
Ssu4g2181 733 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2181 733 MobiDBLite consensus disorder prediction 575 589 - -
Ssu4g2181 733 MobiDBLite consensus disorder prediction 476 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2181 Ssu-Chr4 50274547 50286234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2181 10 278 CBL-interacting serine-threonine protein kinases AT2G30360 36.957 5.12e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Ssu4g2181 Pkinase 5.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2181 K08269 - gmx:100791596 1340.87