Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2164 ATGACAATGAATCCACACCTTACGGGATTTTCTGGTTCCACAAATGAGGTTCGGTTGGGAAATCAATCTTTGCCAATTCTTCAGAATCAGAGATTTGATAATGGACCCAGATTTGAAAATCTCTTCTTTGATCAAAGTAAGAAATTTGATTATCTTCAATCCGATCCAAATCCATTACAAGCTAATACACCTTCATCCTCCACTGTGACCCATGAGGAGCACTCTCCAGAGGACTGTGATTTTTCTGATGCAGTTTTGAGTTACATCAGTGAGATCCTCATGGAGGAAGACATGGAGGACAAGACATGCATGCTTCAAGATTCTTTAGATATTCAAGCAGCTGAGAAATCGTTCTATGAGGTGCTGGGGGAAAAGTACCCTCTTTCTCCAGGAAATCCAAGCCTTACCAATGATGGAGTTGGAGCTTATGACTTCTCTGGAGATTATGGCAATTGTCCTGATACCAATGGGGATCTCATGAGCATTTTTACTAACCATTTTTTGCCACCTAAGTCAGGTAACTTTCCAGCACATAGTTTTCATGGTCATAGCATTTCACATTCATCTTACAACCCTTCCAATAGTGTGGAAGGGCTTGTAGATTCTCCAAACAGTATTGTTCAGGTTCCTGATCTGAGCAGTGAAAGTCAATCCATTTTGCAATTTCAGAAAGGTGTTGAGGAGGCTAGTAAGTTTCTTCCAAGCACAAATGGGCTGTTTGCTAATTTGTCACAACCAGAGCCAAAAGTAGAAAAGGATGAATTATCAGTTAAAgtggagaaggagaaggaggagGGGGAACATGTTATTGGTGGATCGAAGGGAAGGAAGCATCCTCAAATGGACGAAGGAGATGTTGAAGAAAATAGAAGCAGCAAGCAAGCGGCAATTTATTCTGAACCAACATTGCGGTCAGATATGGCTGATATAATCCTGCTTCATAGCACTGGGGATGGTAAGGACCACTATGTGGCTTTCCGCGAGGCATTGCAGAAAAAGACACAGAAGGCAGTGTTGCCAGAACGTCAATCAAAAGCATCCAGCAGTGGGAAGGGGCGCGGTAAGAGACAAGGTGGGAAGAAGGAAGTGGTCGATTTGACAACACTTTTGGTTCTATGTGCACAAGCTGTTGCAGCAGATGACCATAGGAATGCGAATGAGTTGCTAAAGCAGATCAGGCAACACTCTACCCCTTTCGGAGATGGAAATCAGAGGCTGGCTCATATTTTTGCAGATGGACTTGAGGCGCGTTTGGCTGGTACTGGCAGCCAAATTTACAAAGGACTTGTTAGTAAAAGAACATCAGCTGCTAATGTTCTAAAAGCTTATCATCTATACCTTGCTGCATGCCCCTTTAGGAAAATTTCTAACTTCACCTCAAACATCACAATAAGGACATCTTCAGCACAGTCAATGAAGGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAATGGCCCACTTTTATACAACGGCTTTCATGGAGAACAGGAGGACCTCCAAAGCTACGGATCACTGGAATAGACTTCCCACAACCCGGTTTCAGGCCAGCAGAAAGAGTTATGGAAACGGGAGGCCGGTTGGCAGCTTATGCTGCGGCCTTTAATGTTCCATTTGAGTATAATGCCATAGCAAAAAAATGGGACACAATTCAACTTGAGGAACTCAATATTGATAGGGATGAGTTCCTTGTTGTTACATGTTTCTATAGAGGTAAGAACTTGCTGGATGAATCTGTGGTAGTGGACAGTCCAAGGAATAATTTCCTCAGCTTGATTAGGAAGATCAACCCAAAGTTGTTCATTCATGGCATCATGAATGGGGCATTTAATGCCCCTTTCTTTGTTACCAGATTCCGGGAGGCATTGTTTCATTACTCGTCGCTGTTTGATATGCTTGAGACTATTGTGCCTCGTGAGGATTGGGAGAGGATGCTGATAGAGAAAGAGATATTTGGGAGGGAAGCATTGAATGTCATAGCTTGTGAAGGCTCTGAAAGGGTGGAGAGGCCAGAGAGCTGTAAGCAGTGGCAAGCACGTATTCTGCGGGCCGGGTTTTTGCAACAATCTTTTGATCGCGAGACAGTGAAGATGGCAATGGAGAAAGTGAGGTGTAGCTACCACAAGGATTTTGTGATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGCATAATTTATGCTCTTTCTTGTTGGAAACCTGCATGA 2220 0.4288 MTMNPHLTGFSGSTNEVRLGNQSLPILQNQRFDNGPRFENLFFDQSKKFDYLQSDPNPLQANTPSSSTVTHEEHSPEDCDFSDAVLSYISEILMEEDMEDKTCMLQDSLDIQAAEKSFYEVLGEKYPLSPGNPSLTNDGVGAYDFSGDYGNCPDTNGDLMSIFTNHFLPPKSGNFPAHSFHGHSISHSSYNPSNSVEGLVDSPNSIVQVPDLSSESQSILQFQKGVEEASKFLPSTNGLFANLSQPEPKVEKDELSVKVEKEKEEGEHVIGGSKGRKHPQMDEGDVEENRSSKQAAIYSEPTLRSDMADIILLHSTGDGKDHYVAFREALQKKTQKAVLPERQSKASSSGKGRGKRQGGKKEVVDLTTLLVLCAQAVAADDHRNANELLKQIRQHSTPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSAANVLKAYHLYLAACPFRKISNFTSNITIRTSSAQSMKVHVIDFGILYGFQWPTFIQRLSWRTGGPPKLRITGIDFPQPGFRPAERVMETGGRLAAYAAAFNVPFEYNAIAKKWDTIQLEELNIDRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLSLIRKINPKLFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGSERVERPESCKQWQARILRAGFLQQSFDRETVKMAMEKVRCSYHKDFVIDEDSQWLLQGWKGRIIYALSCWKPA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2164 739 MobiDBLite consensus disorder prediction 54 70 - -
Ssu4g2164 739 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 738 IPR005202 -
Ssu4g2164 739 MobiDBLite consensus disorder prediction 260 299 - -
Ssu4g2164 739 ProSiteProfiles GRAS family profile. 357 737 IPR005202 -
Ssu4g2164 739 MobiDBLite consensus disorder prediction 260 290 - -
Ssu4g2164 739 Pfam GRAS domain family 367 737 IPR005202 -
Ssu4g2164 739 PANTHER SCARECROW-LIKE PROTEIN 9 46 738 - -
Ssu4g2164 739 MobiDBLite consensus disorder prediction 54 78 - -
Ssu4g2164 739 MobiDBLite consensus disorder prediction 334 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2164 Ssu-Chr4 49642504 49644723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2164 77 738 GRAS Transcription Factor Family AT2G37650 55.015 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g2164 GRAS 1e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2164 - - gmx:100780785 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2164 4 49642504 49644723 Ssu4g2164 4 49642504 49644723 ECH
Ssu4g2164 4 49642504 49644723 Ssu8g0450 8 7145915 7148328 ECH