Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2157 ATGGGTGCTTGTTGGAGCAGTAGGATTAAGGCTGTGAGTCCTTCCAATACAGGGTTCACTTCTAGGAGTGTGAGCAGAGATGGCCATGACATCCACTCCAGTAGCAGGAACTCATCAGCCTCCATACCTATGACCCCTCGGAGCGAGGGCGAGATCTTACAATCTTCCAATTTGAAAAGCTACAACTACAATGAGCTAAAAACAGCCACAAAAAATTTCAGCCCAGAAGTTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTTTAAGGGCTGGATTGATGAACATTCACTTGCTGTTACCAGGCCGGGAACAGGCATGGTTGTTGCTGTGAAGAGACTTAACCAAGAGGGGTTTCAGGGTCATAAGGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAGGTTGATAGGCTACTGCTTAGAGGATCAGCACCGTCTtctaatttatgaatatatgcCTAAAGGCAGTGTGGAGAATCATCTGTTCAGGAGAGGCTCTCATTTTCAGCACCTTTCTTGGACTTTACGATTGAAAATAGCCCTTGGGGCTGCAAGGGGTCTTGCTTTTCTCCATAGCACAGAAACTAAAGTCATATACCGTGACTTTAAGACTTCCAATATCCTGCTTGATACTACCTATAATGCCAAACTTTCTGATTTTGGGCTGGCGAGAGATGGACCAACTGGTGATAAGAGCCATGTTTCTACTAGGGTCATGGGAACCCATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTCACTGCCAAGAGTGATGTCTATAGTTTTGGAGTAGTTCTTTTGGAAATGTTATCAGGAAGACGCGCCATAGACAAGAACCGTCCATCCGGAGAACAATGCTTAGTTGAATGGGCAAGGCCTTACCTTTCTAACAAACGTAGAGTTTTTCGCGTAATGGATAGTCGTCTTGAAGGCCAGTATTCCCTTAACCAAGCTCAAAGGGCAGCCACCCTTTCTTTTCAATGTCTTACTGTAGAGCCCAAATACAGGCCAAACATGAATGAGGTGGTGAGAGCATTGGAGCAGCTACACAAATCAAATGATCAGGTGAAAAATGGCGATCATAAAAAGCATAGAGTGAGTGGTTCTGGCCTTGGCCATCCCAATGGACTCCCTGCATCTATTAGCAGAGGAAGTGCAGATGTTCCCCAAAAATTTGCTTATCCCAGgccttcttcttctctcctttATGCTTAA 1242 0.4404 MGACWSSRIKAVSPSNTGFTSRSVSRDGHDIHSSSRNSSASIPMTPRSEGEILQSSNLKSYNYNELKTATKNFSPEVVLGEGGFGSVFKGWIDEHSLAVTRPGTGMVVAVKRLNQEGFQGHKEWLAEINYLGQLQHPNLVRLIGYCLEDQHRLLIYEYMPKGSVENHLFRRGSHFQHLSWTLRLKIALGAARGLAFLHSTETKVIYRDFKTSNILLDTTYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWARPYLSNKRRVFRVMDSRLEGQYSLNQAQRAATLSFQCLTVEPKYRPNMNEVVRALEQLHKSNDQVKNGDHKKHRVSGSGLGHPNGLPASISRGSADVPQKFAYPRPSSSLLYA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2157 413 MobiDBLite consensus disorder prediction 34 49 - -
Ssu4g2157 413 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Ssu4g2157 413 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Ssu4g2157 413 MobiDBLite consensus disorder prediction 360 413 - -
Ssu4g2157 413 PANTHER KINASE 1B 22 392 - -
Ssu4g2157 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Ssu4g2157 413 MobiDBLite consensus disorder prediction 360 376 - -
Ssu4g2157 413 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Ssu4g2157 413 PANTHER OS01G0588500 PROTEIN-RELATED 22 392 - -
Ssu4g2157 413 SUPERFAMILY Protein kinase-like (PK-like) 40 355 IPR011009 -
Ssu4g2157 413 MobiDBLite consensus disorder prediction 13 49 - -
Ssu4g2157 413 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2157 413 CDD STKc_IRAK 79 358 - -
Ssu4g2157 413 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2157 Ssu-Chr4 48949678 48952665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2157 26 355 Glycoside Hydrolase AT3G07070 47.734 3.66e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu4g2157 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2157 - - gmx:100795058 762.681