Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2154 ATGAAGGAGAGGCAGCGTTGGAAGGCTGAAGAGGATGCATTGTTATGTGCTTATGTCAGGCAGTACGGTCCCAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCAGGCATCAAGAAAGGGTCTCTAACCGAGGAAGAGCAGCGCCTTGTTATCCAGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAAATTGCTGCAGAAGTTCCGGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGcaacaaaggaaaaaacaagagattaacaaaataattggcCCAGTTGATGATACCAAATATGATCATATACTAGAGACTTTTGCAGAAAAGCTAGTGAAAGAACACCCTTCACAATCATCATACCTTATGGCTGCTTCTAATGGACCCTTTCTCCACACTGTTGCACCTCCACCTGCATCATCAGCATTGCTTCCTCCTTGGCTTTCAAATTCTAGCACCAATCCCTCACCAGCAATTAGGCCAACTTCCCCGTCTGTGACACTAAGTCTCTCCCCCTCAACAGTGCCTCCTCCGTGGTTGCAACCTGAAAGAGGACCGGGGAATGCAACAGCACCTCATGGTGGATCTGTTCCGGCTTTCGGCGATAACATGGTAGTGTCAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGGCATCGCGCTTGGGCGGCGCATAGGAAGGAGGCGGCGTGGCGGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGTGAGTCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTTTGGGAAGAACAGAATGCTGCTTTGGATAGAGTTGAAGCAGAATATAGAGAACAGTTAGCAGGGTTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGCAATGGAATTCAAAGCATATGAGGATAGTGCAGTGTATGGAGCAAGTAGGATGTAGAATACCCCGGATTGCTGAGGCTAATGGAAGGTGA 1062 0.4708 MKERQRWKAEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIQLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRKKQEINKIIGPVDDTKYDHILETFAEKLVKEHPSQSSYLMAASNGPFLHTVAPPPASSALLPPWLSNSSTNPSPAIRPTSPSVTLSLSPSTVPPPWLQPERGPGNATAPHGGSVPAFGDNMVVSELIECCKELEEGHRAWAAHRKEAAWRLRRVELQLEAEKVSRRREKMEEIEAKIKALWEEQNAALDRVEAEYREQLAGLRRDAESKEQKLVEQWNSKHMRIVQCMEQVGCRIPRIAEANGR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2154 353 PANTHER TRANSCRIPTION FACTOR AS1 1 353 IPR031055 GO:0005634|GO:0006351|GO:0010338
Ssu4g2154 353 MobiDBLite consensus disorder prediction 177 221 - -
Ssu4g2154 353 CDD SANT 6 53 IPR001005 -
Ssu4g2154 353 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Ssu4g2154 353 Pfam Myb-like DNA-binding domain 7 68 - -
Ssu4g2154 353 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Ssu4g2154 353 CDD SANT 63 104 IPR001005 -
Ssu4g2154 353 Coils Coil 301 321 - -
Ssu4g2154 353 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 353 - -
Ssu4g2154 353 MobiDBLite consensus disorder prediction 177 200 - -
Ssu4g2154 353 Gene3D - 62 119 - -
Ssu4g2154 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Ssu4g2154 353 Coils Coil 262 285 - -
Ssu4g2154 353 SMART sant 58 106 IPR001005 -
Ssu4g2154 353 SMART sant 3 55 IPR001005 -
Ssu4g2154 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Ssu4g2154 353 Gene3D - 4 58 - -
Ssu4g2154 353 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2154 Ssu-Chr4 48827799 48828860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2154 1 346 MYB Transcription Factor Family AT2G37630 64.611 1.64e-157 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2154 Myb_DNA-bind_6 7.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2154 K09422 - zju:107430642 511.146