Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2153 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTACGTTCTTATGTCAAACAGCATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATAAAAAAAGGACCCCTTACCGAAGAAGAGCAGCGTCTTGTCATCCGCCTTCAAGCAAAATACGGGaacaaatggaagaaaattgctGCAGAAGTCCCAGGTCGCACTGCTAAGCGGTTAGGCAAGTGGTGGGAAGTCTTCAAAGAGAAGCAgcagagagagaaaaaggagatCAATAGAATCGCCGACCCAATTAACAATAGTAAGTACGAGCACATACTTGAGAGTTTTGCAGAGAAACTAGTGAAGGTACGCCCTTCACCATCATTTGTTATGGCTGCTTCCGATGGGGCATTTCTGCATACCGATACACCAGCGCCTGCATCAGCCTTGTTTCCTTCTTGGCTTTCAAATTCTAGTAGTGCTGCAGCTGTCAGCCCAAGTTCCCTTTCCGTGACACTCAGTCTTTCTCCCTCAACAGTGGCAGCGCCTCCATTTTCATGGTTGCAACCTGAGAGAGGACCAGACAAAGCTCCTTTTGTTTTGGGGAACGTAGCAGTGCTTCACGGAGCTGTTCCAGCTTTAAGTGATAACATGCTTTTATCTCAGATGGTGGAGCACTGTAAAGAGTTGGAAGAGGGGCATCATGCTTTGGCCACGCACAAGAAGGAGGCAGCATGGAGGTTAAGTCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGTCGAAGAAGGGAGAAGATGGAAGAATTTGAAGCAAAGATCAAAGCTCTTAAGGAAGAGGAGAAAGCTTCTTTGGGTAGAATTGAAGCAGAATACAGAGAACAGTTAGCTGCATTGAGGAGAGATGCCGAAAACAAGGAGCAAAAGTTGACAGAACAATGGACTGCAAAGCATTTGCGGCTTACTAGGTTACTAGAGCAATTAGGATGCAGAGCAGGGCTCCCTGAGCCTAATGCAAGATGA 1074 0.4581 MKERQRWRAEEDALLRSYVKQHGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGPLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEINRIADPINNSKYEHILESFAEKLVKVRPSPSFVMAASDGAFLHTDTPAPASALFPSWLSNSSSAAAVSPSSLSVTLSLSPSTVAAPPFSWLQPERGPDKAPFVLGNVAVLHGAVPALSDNMLLSQMVEHCKELEEGHHALATHKKEAAWRLSRVELQLESEKASRRREKMEEFEAKIKALKEEEKASLGRIEAEYREQLAALRRDAENKEQKLTEQWTAKHLRLTRLLEQLGCRAGLPEPNAR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2153 357 Gene3D - 61 126 - -
Ssu4g2153 357 Coils Coil 277 304 - -
Ssu4g2153 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Ssu4g2153 357 PANTHER TRANSCRIPTION FACTOR AS1 1 357 IPR031055 GO:0005634|GO:0006351|GO:0010338
Ssu4g2153 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Ssu4g2153 357 CDD SANT 6 53 IPR001005 -
Ssu4g2153 357 Pfam Myb-like DNA-binding domain 7 68 - -
Ssu4g2153 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 357 - -
Ssu4g2153 357 Gene3D - 4 58 - -
Ssu4g2153 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Ssu4g2153 357 CDD SANT 63 104 IPR001005 -
Ssu4g2153 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Ssu4g2153 357 SMART sant 3 55 IPR001005 -
Ssu4g2153 357 SMART sant 58 106 IPR001005 -
Ssu4g2153 357 Coils Coil 306 330 - -
Ssu4g2153 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2153 Ssu-Chr4 48746831 48747904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2153 1 352 MYB Transcription Factor Family AT2G37630 63.144 4.05e-151 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2153 Myb_DNA-bind_6 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2153 K09422 - gmx:100101908 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2153 4 48746831 48747904 Ssu4g2153 4 48746831 48747904 ECH