Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2144 ATGGCTGAGGAGAAGTCAGAGCAGTGTTGTTTGGAGAATAACCAAATTAATGCTACTTCTAGCTCTTCTGTATCAGAAGGCAGTGGCAGTGCTATACCCAAGTCATCAAGGAAATGTAGCCCAGCATCATCATTACCCTCTAATCGGAGGACCACTGGCCCTGTTAGGCGCGCAAAGGGTGGTTGGACGGCAGAGGAGGATGAGACATTAACAAATGCTGTTGCAGTTTTTAATGCCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTCGTTAAAGGACCTTGGACTCAGGAGGAGGATGATAAAATAGTTGAAATGGTGTCTAAACATGGACCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGAATAGGAAAACAGTGCCGAGAACGTTGGCATAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTGGCCCTTATCAATGCTCATTGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTTCTTCATGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGttctttgaagaaaaagatgGATTTCTATTTAGCTACTGGTAGCCTCCTGCCAATTCTGAAGAGCAGTGCACAAGTTGCTGTCAAAGATACAGTTAGACATTCTACATCTAACACAATACATGTTTGTTCAAATAAAGGATTAGATGACACCATTGTATCATCATCTAAAACGACAGAGTTTAGTAAGCCGGATAACAGTGATAAGAATCAACTAGAGTCCTCAGGAACAGTTACAGAGGTTGGTGATTCTTCAAATGTTCCTGCAAATGAATCTGCTGATTCTGCCTGCATAGAATGCAGTAGATCCTCCAACATAAGTCTCAACTGTAGTAACTTGGAACCAGCGTCAAGAGATAATCTGGGAATAAACAGTGAGCCAAAATTTGAGAATCCTGGACTCAATGGCAACCCAACAATTGATCATTGTATGAATAATGGTGAAATGAACAGAGGCAGGTTAACCAGAAATTTTTGTTCAAAGGAAAGTCTCAccctttgttctttttgttaTGAGCCACCGCAGTTCGATAATTTGCGTCCTTTAGATTCTCTTTGTTCACCCGTTGGTTTCTTAACTCGACCTCCTGTGAAGGGAAGTGAATTATGCCAAGAATCTCCTGAATCAATATTGAAAAAGGCAGCTAAAACATTCCCAACTCCTTCCATATTGAGGAAGAGAAGGAATGGAATCAAAAGACCTGTCACTCCTAGTAAGGTTGCAAAAGAAGTTAATGATTCACACGCTTATAATGAACAAGGGAGAACAAATGATATTTCTGGTTCTGAAGTTGTGAGGTTATCTCTGAGTCCAGCAAGCCTTAGCTATGGGAGTAACATTCCCCATAATAAGGCCTTCAATGCAACTCCTCTATACCGATTAATATCCAGGCAAACAACGATTAAGTCTTTGGAGAAACAGCTTGAGTCTGCATTTGACATAGAGAAGTGTGCTCGTAAGATGGAAAAATCTACAAAGAGGAGAGTGATGTAA 1608 0.398 MAEEKSEQCCLENNQINATSSSSVSEGSGSAIPKSSRKCSPASSLPSNRRTTGPVRRAKGGWTAEEDETLTNAVAVFNAKNWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVEMVSKHGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALINAHCIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKMDFYLATGSLLPILKSSAQVAVKDTVRHSTSNTIHVCSNKGLDDTIVSSSKTTEFSKPDNSDKNQLESSGTVTEVGDSSNVPANESADSACIECSRSSNISLNCSNLEPASRDNLGINSEPKFENPGLNGNPTIDHCMNNGEMNRGRLTRNFCSKESLTLCSFCYEPPQFDNLRPLDSLCSPVGFLTRPPVKGSELCQESPESILKKAAKTFPTPSILRKRRNGIKRPVTPSKVAKEVNDSHAYNEQGRTNDISGSEVVRLSLSPASLSYGSNIPHNKAFNATPLYRLISRQTTIKSLEKQLESAFDIEKCARKMEKSTKRRVM 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2144 535 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Ssu4g2144 535 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Ssu4g2144 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Ssu4g2144 535 MobiDBLite consensus disorder prediction 8 51 - -
Ssu4g2144 535 Gene3D - 164 244 - -
Ssu4g2144 535 CDD SANT 113 157 IPR001005 -
Ssu4g2144 535 PANTHER MYB PROTEIN-RELATED 391 461 - -
Ssu4g2144 535 PANTHER MYB PROTEIN-RELATED 19 304 - -
Ssu4g2144 535 Gene3D - 111 162 - -
Ssu4g2144 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Ssu4g2144 535 Gene3D - 58 110 - -
Ssu4g2144 535 PANTHER MYB-RELATED PROTEIN B-LIKE 19 304 - -
Ssu4g2144 535 MobiDBLite consensus disorder prediction 273 295 - -
Ssu4g2144 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Ssu4g2144 535 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Ssu4g2144 535 PANTHER MYB-RELATED PROTEIN B-LIKE 391 461 - -
Ssu4g2144 535 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Ssu4g2144 535 MobiDBLite consensus disorder prediction 261 295 - -
Ssu4g2144 535 CDD SANT 62 105 IPR001005 -
Ssu4g2144 535 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Ssu4g2144 535 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Ssu4g2144 535 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Ssu4g2144 535 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Ssu4g2144 535 SMART sant 110 159 IPR001005 -
Ssu4g2144 535 SMART sant 58 107 IPR001005 -
Ssu4g2144 535 SMART sant 162 210 IPR001005 -
Ssu4g2144 535 CDD SANT 165 208 IPR001005 -
Ssu4g2144 535 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2144 Ssu-Chr4 47474450 47479010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2144 2 535 MYB Transcription Factor Family AT3G09370 43.841 7.16e-124 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2144 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2144 K09422 - gmx:100777236 715.687