Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2143 ATGGGAAGGAAGATTCAGCACAAACATTCTGACTCATATTGGGTCAATCATGACCCAGAGTGCAGCAGGACcctttttcatattattaagtACCATCCCCTCTTGTGTCATTTCTTTGAAAGACTTGCATACAAGAGGGGTAGGGATGAAAGAAGTGCTGCAGGGAATGTGCTTGTATTCTCAGCAGAGAGAAAGAAGGAACTCGACCTTGTTGTGACAAGAAACTCTAATGTTGAGAAAAAGATGACACCATATTCTTCATTTGCAAAAGACTCAATAAGGAGCCAGATAAAAGCAATTGTTGTGAAAGAGATATCAAAGAAGAGGAATAGATATCATAGAAGTTCAACCTGTCCTCTGGCTACAATCAACATGAACAAGAACTTGTTAACAACATTTCTGCAAGATCCAGTCTCTCCTTTGGTCCGTCACCTCCATAAACAACAGGTGTATGGCTCAAAAATGACATTAACTAGGTCTATATCATTTCCTCTACCTGACTCATCATCAAAAAGACAATGTTCTGGGGCTACAGGCAATGATTATCTACCAAAAGGGAAAGGGAAATTATGTTTTGACAATAAAACACCAAAGTCAGTTCAATTTGAATCCTCAAAAAAGTTTTATGTAAGGTCCATTGCATCAGGAGCAAGATGTTTCAATGTAAATGAAGCAATGATGGTAAGAGACGTTAAATGTTCTTCAGTATCTGCTCAGGGTCAGAATCAGAATGAAATCAAACAGTTTAAGAATCTGAAACAGAAAATTCAGCATGTTACAGGAGAGAGTAGAAAAGAAAAGCTTCGTGTTACTATGGATGCCGTCATTCACAAACTTCCCCAAGGCCATGGGATTTCAAATGATTTGAAGAAggaaattttcaagaaattgaCAGATCCTAATATTACTAGAAAAGGTGAATACTATCATGAAAGTAGTAGTGAGAGTGATCACTCTACTCCTTCATTTACCAAGCATCACAGGCACAACATAAGAAGAATCTGGTCTCTTCAAGAACCACTAGAAATTTATTGGCAACTCTATGAGAATAGGTTTAACACAGAACCAAGTCACCTTCAATCTAAGCGACTAAAATTAGCAGAAAAGGCACATTCACCATTGAGGAGGCTGATACCCTTACAAAGGATGCGTTCATTACCTGATCTCCAATCTTTTTCCTATGCTTATCAGAATGGGGAGTTTCCTGATATTTCATCTGTCACCGAGCCAATCACGGCTTCTGGGGATGGAACTATGAGTTCAGAGAATATTGCCTATCAGAAAAAGAGGCTTGACCTTAATTTACCTTCAAAAAGTCAACTGCAGTTAGATACACCTGTAgaaaatttgattcaaaaacACCTTGTCAGTGTAGGTGAAAATGATTTAGTGATGAGTAATATTGTGGAACCAGGATCAGATTGCAGCAGAGAGATTAATGGCAAGGTGGGCATGACAACTGATGATTTTGGACACAGTTGTTTAAAAAGTGGTGGTACTTTTAATGACCAGGATATTGAGCCAATAAAAGAATGCAAGACTGCAATAGCAGCATCAGTagattcaaaatcaaatctggGACCCAGCGACAAACTGGATAAAATGGCTGAGCAACAAGAGGCTATCATGGATTTCCTTAAAGTGAAAGAGACCACAGAGAATGCACAAAAAGTGGAGATTCAAAGCAAGCAGTTGAATTATGGCATTCCTCTTTTTCATGGTGACACCAGAGACAAAGCTGAGTTTAATTATGTGAAATATGTACTTGAGATATCTGGACTGACTGGTAAAGAGTGCCTTTCAGCATGGCATTCTAGAGACCATCCAGTTGATCCACTACTCTATGAAGAAATGGAAGGTGACCCTGATTTCTGTAGTTATGGGGGTAGTGGTCAGTGTAATCACCATGTattgtttgatttaattaatgagACATTGTTGGAACTTTCTGGGAGGTCTTACTGCTACTGTCCCATACCATTGTCCTCATCTCTTTCTCACACTCATTCAATGCCAAAAGGGTGCCACAATCTTCATCAAGTGTGGATTCATATGAGCAAGTCCTTATGCTTGAGATCCAAAGCTGACCTAACAATAGATGACCATGTAAGTCGAGATCTAGAAAGGCGTGATGGGTGGGTGAACCTTCAATTGTTTGATCAATGTGTGGGTTTGGAACTGGAAGACTTGATTTTTCATGATCTCCTGGAGGAAATAACATCGGACCTAGCTTGCATTTAA 2241 0.3802 MGRKIQHKHSDSYWVNHDPECSRTLFHIIKYHPLLCHFFERLAYKRGRDERSAAGNVLVFSAERKKELDLVVTRNSNVEKKMTPYSSFAKDSIRSQIKAIVVKEISKKRNRYHRSSTCPLATINMNKNLLTTFLQDPVSPLVRHLHKQQVYGSKMTLTRSISFPLPDSSSKRQCSGATGNDYLPKGKGKLCFDNKTPKSVQFESSKKFYVRSIASGARCFNVNEAMMVRDVKCSSVSAQGQNQNEIKQFKNLKQKIQHVTGESRKEKLRVTMDAVIHKLPQGHGISNDLKKEIFKKLTDPNITRKGEYYHESSSESDHSTPSFTKHHRHNIRRIWSLQEPLEIYWQLYENRFNTEPSHLQSKRLKLAEKAHSPLRRLIPLQRMRSLPDLQSFSYAYQNGEFPDISSVTEPITASGDGTMSSENIAYQKKRLDLNLPSKSQLQLDTPVENLIQKHLVSVGENDLVMSNIVEPGSDCSREINGKVGMTTDDFGHSCLKSGGTFNDQDIEPIKECKTAIAASVDSKSNLGPSDKLDKMAEQQEAIMDFLKVKETTENAQKVEIQSKQLNYGIPLFHGDTRDKAEFNYVKYVLEISGLTGKECLSAWHSRDHPVDPLLYEEMEGDPDFCSYGGSGQCNHHVLFDLINETLLELSGRSYCYCPIPLSSSLSHTHSMPKGCHNLHQVWIHMSKSLCLRSKADLTIDDHVSRDLERRDGWVNLQLFDQCVGLELEDLIFHDLLEEITSDLACI 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2143 746 Pfam Domain of unknown function (DUF4378) 581 738 IPR025486 -
Ssu4g2143 746 PANTHER DUF4378 DOMAIN PROTEIN 272 746 - -
Ssu4g2143 746 PANTHER PROTEIN TRM32 272 746 IPR044257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2143 Ssu-Chr4 47380189 47383933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2143 562 732 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 46.739 2.72e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2143 - - gmx:121174644 1045.03