Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2138 ATGGACTACATGATATTCATCCCACTAATTTCCTTGGTATACGTATTCATTCATATCCTGGTCTTTAGCCATAGTagcaaaaacacaaaatatcCCAAGCTCCCCCCTGGTCCTCCCAGTTATCCCATCATCGGAAACATATTACAACTTGGCCCAACCAAACTGCATCAATCACTTAATAAACTCTGCAAAACATATGGACCTATTATGACTGTTAAAATAGGCACTATTACCACTGTGGTCATTTCCTCTCCAAGCTTAGCCAAAGAAGCCCTTCATAAAAAAGACCAAGCCTTAGCTAGTCGATTTATACCGGCGTCTGTCCAAGCACTTTCACATGATAAAGCTTCCATTGTATTCTTGCCTGTATCAAAAAAGTGGAAGACCTTTAGAAAAGTTTGTGCTACCAAAATATTCTCTGCTCAACAACTTGATTCTACCCAAGCTCTGCGccaaaaaaagatgaaagaccTACTTGACTTCTTGCAAGAAAATTGCCAAAAGGGTCAAGCTATTGATATTGGTGAGATTGCATTTACTACAGTGCTTAATTCAATATCAAACACCCTTTTCTCCATTGACTTGGCTAGCTATAGTTCCGGTATTTCTCAAAAGTTTAGGAATGTTATTTCGTGTGTGCTCACGGAAGCTTCGAAGCCTAATATTGCAGACTATTATCCTATTTTACGTAGACTTGATCCGCAGGGAGCACGACGAAGGATGAAAAACTATTACCAGACATTACTCAATGTTTTTGATTGTATCATTGAAGAAAGAATTCAAAAGGGAGATTCCATCGAAGGAAGTGATGTCTTAGACTCATTTCTCGATATCACCCGAAGGGAAAATTCAGAATTAACACGCCCTGATGTGTTACATTTATTTCAGGACTTATTTGTGGCTGGGTTGGATACAACATCAGCCACAATAGAATGGGTTATGGCAGAGTTGTTACACAACCCagagaaaatgacaaaaataaggAAGGAACTTCAACAAGTCCTGGACAAAGATGGAGAACCTAAAGATTCAAATATCTCTAAGCTCACTTACCTACAGGCCATTGTGAAAGAAACTCTTAGATTGCACCCAACAGCCCCAATACTAATCCACAAATCAGTGGCTGAGGTAGACATATGTGGCTTCTGGGTCCCCAAAGATGCACAAGTTCTTATTAATGTATGGAGCATGGGGCGAGACTCAAGTATTTGGACTGAACCAAATTTGTTTCTACCTGAAAGGTTTTTGGAGAATGAAAAGGATTTCAGAGGAGACGATTTTGGATTTATTCCCTTTGGTTGTGGTAGAAGAATATGTCCTGGCATTCCACTAGCTGATAGGGTTGTGCATACCATGTTGGCCTCACTTCTATATCATTTTGATTGGAAGCTAGCAGATGGGGGGAAATCAAAAGACATGGACATGACTGAAAAATTCGGAATTACTTTACACAAAGTCAAGCCTCTTAAGGCAATTCCCATCAAAGAATAA 1491 0.383 MDYMIFIPLISLVYVFIHILVFSHSSKNTKYPKLPPGPPSYPIIGNILQLGPTKLHQSLNKLCKTYGPIMTVKIGTITTVVISSPSLAKEALHKKDQALASRFIPASVQALSHDKASIVFLPVSKKWKTFRKVCATKIFSAQQLDSTQALRQKKMKDLLDFLQENCQKGQAIDIGEIAFTTVLNSISNTLFSIDLASYSSGISQKFRNVISCVLTEASKPNIADYYPILRRLDPQGARRRMKNYYQTLLNVFDCIIEERIQKGDSIEGSDVLDSFLDITRRENSELTRPDVLHLFQDLFVAGLDTTSATIEWVMAELLHNPEKMTKIRKELQQVLDKDGEPKDSNISKLTYLQAIVKETLRLHPTAPILIHKSVAEVDICGFWVPKDAQVLINVWSMGRDSSIWTEPNLFLPERFLENEKDFRGDDFGFIPFGCGRRICPGIPLADRVVHTMLASLLYHFDWKLADGGKSKDMDMTEKFGITLHKVKPLKAIPIKE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2138 496 Gene3D Cytochrome P450 20 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 494 - -
Ssu4g2138 496 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 SUPERFAMILY Cytochrome P450 35 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 Pfam Cytochrome P450 35 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2138 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Ssu4g2138 496 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2138 Ssu-Chr4 46666471 46669266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2138 34 496 Cytochrome P450 AT2G45550 46.285 2.74e-156 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2138 - - pvu:PHAVU_010G012700g 707.983