Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2129 ATGGGAGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACGCTCGCCGGAAAAACCCTCGCCGTCGATGCGAGCATATGGATGGTGCAGTTTGTCAAAGCGATGCGCGACGAGAAGGGCGAAATGGTTCGCAATGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGCACCAAGCCGGTCTTCGTCTTCGATGGCGGAACCCCTGCCCTCAAGCGCCGCACAGTCATCGCGCGCCGCCGGCAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAAACTGCCGAGAAATTGCTACTCAATCATTTAAAGGCACTAAGGTTGAAGGACCTGGCTGATAATATTAAGAAACAGAGGATGAAGCAGAATAGTGATAAGGGTCAGAAAAAATCTAATCAGAAGGACTTTGCTGGTAGTGATTTAGGAGGAAGTCATGTGAAAGAGCTAGATGAAATgtcTGTGGCTAAATATGCGGCCAAGGAGGATAGAAATTCTTTGCAGGCAACAATATCAACAAGTTGCAACCAAGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCAGCAGAGGAAAATGGAATACATGCCAGAACAGGAATGCCATCTATTGTAATTAATCCTTCAGAGGAGGAACCTGATGCAGACGAAGAGATTATACTGCCATCAGTAAACGCAGAAGTTGATATAGCTGTATTAGCTGATTTGCCACAGTCAATGCAACTTGATATTCTTGCGCAGcttaaaggaaagaaaaaagaaggactAGTAAAGGAAATTGACAACCAGAAACATCATGAGGTCAATTATCGGGGCAAGGGTAAGGGGATTCTGCTCAGTGAAACTGACATGGTAGGGTGTAGCTCAAGACTTGACAATGTTACATCAAGGAGTGACAATCAAGACACAATTGATGAAATGTTAGCTGCATCTATTgctatggaggaaaatgaagagTTAGTAAATAATGCATCAGCTTCAGTTGGGGCTTCCACTATTGAAGAAGAGGAAGGTGACTATGATGAAGATGAAGAGATGATACTGcCAGCTATGCATGGTGAAGTTGATCCAACTGTTCTAGCCTCATTGCCTCCATCAATGCAACTGGACCTTCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAGATGAGGTGCAGAAAGCAGCAGCTGGAGGAGTAGGTGGTGTACAAACTTCACGGATTGCATCTGAAGCCAACAGGGAATATATATTCTCATCATCTTTTACTGGTGATAAACAAGAACTTACCTCCACcagattagagaaaaataaagatacacAACAGAAGGCACGGGGAGCACATCCTTTACAGAATCTTGCAAATAGCATTGTGGCAGGAAATGATTCTAATACTTCAACTGGATTGGTTCGCAATGAACCTAATGAGCCTGCTGATGAAAGTATTCAGACATATCTTGATGAGAGGGGTCGATTTCGAGTTAGTCGATTGAGAGCTTTGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCTGGAAAGAGCACATGTAAACAAGACTGCAAATATTGGAACAGTGAAAAATGCAGAGAATAATGGTCCATCAGAAAGTTCTGGGATTCAGATTGTTGATAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATCTGCAAAATGAACAAACAATGCTTCACAGGGATACTTCTATAGAGATATCTTTTGAATATGATTGCAAGAATAAGTTTGTAAGTGGTGAGGATGATATATTTTCCAGTTTAGTAGGAGGAAATCCAGTGGCAATCTTTTGTGCTGATGATACTGCAGCAACAGAGCAACCTTCTCATTCTGATTCAGATTGTGATTGGGAAGAAGGAGTTGTTGAAGGTAAGAATACCATTTTTCCTGAACATGATAAGGTAAAATTGAAGTCTTCTGTTGCAGAcgagaataataataatgaaagtgAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCACCTTACAGTCAGGAAAATTGGCATCTCGAGGTTGGTTGGAGGAGGATTCTGATTTGCAAGAGGCAATTAGGAGAAGTCTTGAAAGTACAGGGGGTGGGAGACTTAAATGCACATCATCTGTAGATGAGCATTCAAATACATATGAGAACAAATTGGATCATGGTTTAGAACATGGTGATGATCTGTATTGTTCTGGCCCAGTGGATTTAAATGATCACGCTGGGTTcctgaataataaaaataacatggaGGGTTCCACTTTGTGTAGGGAAGACAGTACTGATCAAAATGAATTACATGAAATTGAAGATGGAGATAAAAGGCATGATTTTGTTTATGGAAATAATGCACAAACATTCCATTTTCATGGAAGTCAGTCAAAGTCACCCATGACATTTAATTCCAATAACACTGAGATATTGATCGACACTCGTTGCAGACTGGATAGTCACTCCTGTTCTGAAGATTCAATTTCAGATACAAATGTAATGATGAAGGACCAGGTCCCTGTGGTTTCAGAGCAATTATTGGATAAACATGATGATGGTAAAGTGTCTTTCTATTGTAACAATCCATCCAAGGTTGATCCACTTGGTGCAAACGAAGAGGAGAAAAAGACCTATATTACTGAATCTGAACCATTGAGTAATTCTACTGACACTACCAAACCTGCTATTCTTTTGATGGAGTCATCCTTGAAAGGATCAACAAAAGACCTTGATATCGAGCCAAAATTGCCTTCAGAGGACAATAAAGGAAATTTCTTTGAGGAAAGGAATAGTAGCCTTGGCAATGATGCTGTTAACACTCTGGGAGATTTTCCTGCTCATGCAGCTGAGGTTAGCTTGGAGGAAGAAATGCAAATTCTTGGTCAAGAATATATCAGCCTAGAAAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCGCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAgtgtttacaaaaatatatttgatgatCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGGAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGCGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTCTTGAAATTCCAACAATGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCGAATACCAGAAAGAAAGGGtcaaaagttgaagaaaagataaattcCTTAAATTGCAATGTTAAAGAGTCTGCATCAGACCAGAACATCCCCCATGCTCAGGAGCAAAACAAGTTGCCAGATAGCATCCAAGAAATAAAGCAAACTTTCTTCAATAAGCATagaaatgttagcaagaATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACGGTTATATCTGCTTACTATTCTCCACATGTTGATAAGTCAACTGAGCCTTTCACATGGGGAAAGCCAGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAGAAAGCAGATGAATTGCTATTACCTGTGTTAAAGGAGTATAACAAACACGAGACTCAGTTGCGGTTGGAAGCATTTTACGATTTTAATGAAAGGTTTGCAAAAATCCGTagcaaaagaattaagaaagcAGTAAAAGGAATCACTGGTAAGCAGCCTTCAGATTTGATAGACGATTCTGCAGAAGAGTTGTCCAAGAGCAAGAAGACGGAGAGAGAACCTGAGGATAGCACATTGGAGACTTCAAGGGGAACAGAGGAAAGTCTTGAAGGTAGAaggaaatcaaaaataaaacagTCGAGGAAAAGGAAGAACGATGGGGATGCTGTTGCTAAGGTGCagtcaaagaaaaagaaagtcaatgATGATCCCTCTTCAGCACCTGGTACATCTGAGATGGAGAATTTACAGTCAAGTATGCAGACAGAAGAGGAGCAGTGTGATGGTAAGGCATTGATTCGGAATAGAAGTTGCAGAGGCAGAAGAAGAGGTAGAGGTAGAGGTGTgggaataaaaagaggaagggAGAGGGAAGGTCTCAATTTTCAATCTTGTGAAACTGAAACCTCATCTGGTAGCAGTGACATTGATGATCATGGGCCAACAGTGCATGTAGATAAAGTTCCAAAAGATGGGCAAAGGTCAATGCGATCTCGGAAACCTATCAACTATTCTTTTGAAGACCGTGAAGATGAAGATGCTGATGGTTTATTTGATCAGATCAATCAGACTGATccaatagaagaaaatttatcTCATATTCATGGCGCATCTGAAGATGGTGCAACTGATTTCGGCATGGGGAAAAAATGCAGGACAATGAATTTTCCTCTGAACGAGAACTTGCCTACAGACTTTCTTGAGTCAGAAGGTTGGTTTTGCATGGATGCCGGTGAAACTAGTCATCTGGGGACTGGCAATGATGTCTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAAACAGGTAACAAGCATGATACAATTGATGATGTCAATACTGCTACAGTGGATTATACTGCAGACTTTCCACACTGTTCTGATTGTTTGGATGAAACTGACCGTGATAAAAATAGTTCAGATATATTGTTTTCTGGCCCTGAAAAGGCTGAAAATGGGACACAAGATGGTGGGGCCTCTTGTAAATTCAATAGAGAGCCAAATGACCTTGTAAATGCTAGTAGTTATGATCATTCTCACATAGGGGTCTTGATACCAGAGAATTCTCATAACAACAATGGAGCCTCCACTGGAGCTTTTACTGCTATGCCGTTTTTGAGGAAAAGAAGGAAGAACTGA 5160 0.3969 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFVKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKDLADNIKKQRMKQNSDKGQKKSNQKDFAGSDLGGSHVKELDEMSVAKYAAKEDRNSLQATISTSCNQEELDEMLAASIAAEENGIHARTGMPSIVINPSEEEPDADEEIILPSVNAEVDIAVLADLPQSMQLDILAQLKGKKKEGLVKEIDNQKHHEVNYRGKGKGILLSETDMVGCSSRLDNVTSRSDNQDTIDEMLAASIAMEENEELVNNASASVGASTIEEEEGDYDEDEEMILPAMHGEVDPTVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLEKNKDTQQKARGAHPLQNLANSIVAGNDSNTSTGLVRNEPNEPADESIQTYLDERGRFRVSRLRALGMRMTRDIQRNLDLMKEIELERAHVNKTANIGTVKNAENNGPSESSGIQIVDKSQEVNVDLVGENLQNEQTMLHRDTSIEISFEYDCKNKFVSGEDDIFSSLVGGNPVAIFCADDTAATEQPSHSDSDCDWEEGVVEGKNTIFPEHDKVKLKSSVADENNNNESEVEWEEGDCDGANSTLQSGKLASRGWLEEDSDLQEAIRRSLESTGGGRLKCTSSVDEHSNTYENKLDHGLEHGDDLYCSGPVDLNDHAGFLNNKNNMEGSTLCREDSTDQNELHEIEDGDKRHDFVYGNNAQTFHFHGSQSKSPMTFNSNNTEILIDTRCRLDSHSCSEDSISDTNVMMKDQVPVVSEQLLDKHDDGKVSFYCNNPSKVDPLGANEEEKKTYITESEPLSNSTDTTKPAILLMESSLKGSTKDLDIEPKLPSEDNKGNFFEERNSSLGNDAVNTLGDFPAHAAEVSLEEEMQILGQEYISLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTRGKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFQQWVESPDPTILGRLDAKSGSNTRKKGSKVEEKINSLNCNVKESASDQNIPHAQEQNKLPDSIQEIKQTFFNKHRNVSKNWHIPSSFPSETVISAYYSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWTGQKADELLLPVLKEYNKHETQLRLEAFYDFNERFAKIRSKRIKKAVKGITGKQPSDLIDDSAEELSKSKKTEREPEDSTLETSRGTEESLEGRRKSKIKQSRKRKNDGDAVAKVQSKKKKVNDDPSSAPGTSEMENLQSSMQTEEEQCDGKALIRNRSCRGRRRGRGRGVGIKRGREREGLNFQSCETETSSGSSDIDDHGPTVHVDKVPKDGQRSMRSRKPINYSFEDREDEDADGLFDQINQTDPIEENLSHIHGASEDGATDFGMGKKCRTMNFPLNENLPTDFLESEGWFCMDAGETSHLGTGNDVSSDDYLKMGGGFCLDDGETGNKHDTIDDVNTATVDYTADFPHCSDCLDETDRDKNSSDILFSGPEKAENGTQDGGASCKFNREPNDLVNASSYDHSHIGVLIPENSHNNNGASTGAFTAMPFLRKRRKN 1719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2129 1719 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 257 1445 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1464 1478 - -
Ssu4g2129 1719 Gene3D - 1 161 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1644 1670 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1325 1497 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1382 1404 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1437 1451 - -
Ssu4g2129 1719 Gene3D - 1107 1162 - -
Ssu4g2129 1719 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Ssu4g2129 1719 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Ssu4g2129 1719 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Ssu4g2129 1719 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 264 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1480 1497 - -
Ssu4g2129 1719 Pfam Ubiquitin binding region 364 389 IPR025527 -
Ssu4g2129 1719 SMART HhH_4 1109 1142 IPR008918 GO:0003677|GO:0003824
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 129 155 - -
Ssu4g2129 1719 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Ssu4g2129 1719 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Ssu4g2129 1719 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Ssu4g2129 1719 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Ssu4g2129 1719 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1107 1316 IPR036279 -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 690 715 - -
Ssu4g2129 1719 CDD H3TH_XPG 1110 1254 - -
Ssu4g2129 1719 Gene3D - 989 1106 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 494 508 - -
Ssu4g2129 1719 SMART xpgineu 1038 1107 IPR006086 GO:0004518
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 129 144 - -
Ssu4g2129 1719 CDD PIN_XPG_RAD2 1024 1111 - -
Ssu4g2129 1719 ProSitePatterns XPG protein signature 2. 1041 1055 IPR019974 GO:0016788
Ssu4g2129 1719 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 257 1445 - -
Ssu4g2129 1719 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 264 - -
Ssu4g2129 1719 SMART xpgn3 1 98 IPR006085 GO:0004518
Ssu4g2129 1719 Pfam XPG I-region 1041 1122 IPR006086 GO:0004518
Ssu4g2129 1719 Coils Coil 994 1028 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1337 1375 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 1405 1426 - -
Ssu4g2129 1719 MobiDBLite consensus disorder prediction 494 514 - -
Ssu4g2129 1719 CDD PIN_XPG_RAD2 2 92 - -
Ssu4g2129 1719 SUPERFAMILY PIN domain-like 2 1122 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2129 Ssu-Chr4 45569399 45596909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2129 1032 1139 Core DNA Replication Machinery Family AT5G26680 36.937 2.20e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2129 K10846 - gmx:100820295 2832.36