Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2128 ATGGCAGGGAGGTATTGTCACACGGAAGTGCTTCCATTCACCGCAATGGTTACCATAGAGTGCACTAACGTTGGTGTTAACGTTCTATTCAAAGCAGCCACTGAGAAGGGGTTGAGTTATTATGCCTTCATCGCTTATTCATATGCGGTCTCcactctctttctccttttgtCCCTGCCCTTCGTCTTCCGATGGTCAAGAGGGCGGCTACCTCCGCTCAACCTGTTTCTCATCTTTAGAATTTTCCTCCTTGGAGTAATTGGACTTACAGCTCAGCTTTGCGGATATAAAGGACTTCAATACACCTCGCCAACTCATGCTTCTGCTCTGAGCAACCTTATACCGGCTTTCACCTTCATATTAGCAATCATTTTCAGGATGGAGAAGGTAGCTTTGAGAAGTTCAAGCACTCGGGCCAAAATCTTGGGTTCATTGGTATCCGTATCAGGTGCACTCATAGTTGTTCTCTATAAGGGCCCCATAATCTTATCAACTTCATCTCCACAACCATCACCGACTGTTGGTTCTCCAATGAACACAAAATCACAAACTAATTGGGTTCTTGGTGGATCTCTACTTGCCATTGAGTTTCTTTTGGTTCCAATCTGGTACATTGTTCAGACCAATATTATGAAACAATGCCCAGCAGAGTTTATTGTGGTCTTCTTATACAACCTGAGTGGGACTCTCATATCTGCACCAGTATGCTTACTATTAGAAGCAAATTTGAGTGCTTGGAAGATAAATCGTGATATAGCATTGATCGCCATTATATATTCGGGTTTCTTTTGCACGGGCCTAAGTAGTTTGGTTCACACTTGGGGCCTCCATCTTAAAGGCCCAGTTTATATATCAATCTTTAAGCCTCTGTCCATAGCCATTGCTGCAGCTTTGAGTGTTATATTCCTCGGTGATGCACTGTATTTTGGAACTGTTGTTGGAGCAGTGATAGTCTCATTTGGGTTTTACGCTGTTATATGGGGGaaagcaaaagaagaagaattgatTGAGAACTTTGACATACGTCCTCCATCCAGTAGTAAGACTCCTTTGTTGCAGAGCTACAAAGTGACAGATAACGAAGAGATCACGTATAGTGATTCTTGA 1107 0.4155 MAGRYCHTEVLPFTAMVTIECTNVGVNVLFKAATEKGLSYYAFIAYSYAVSTLFLLLSLPFVFRWSRGRLPPLNLFLIFRIFLLGVIGLTAQLCGYKGLQYTSPTHASALSNLIPAFTFILAIIFRMEKVALRSSSTRAKILGSLVSVSGALIVVLYKGPIILSTSSPQPSPTVGSPMNTKSQTNWVLGGSLLAIEFLLVPIWYIVQTNIMKQCPAEFIVVFLYNLSGTLISAPVCLLLEANLSAWKINRDIALIAIIYSGFFCTGLSSLVHTWGLHLKGPVYISIFKPLSIAIAAALSVIFLGDALYFGTVVGAVIVSFGFYAVIWGKAKEEELIENFDIRPPSSSKTPLLQSYKVTDNEEITYSDS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2128 368 Pfam EamA-like transporter family 27 155 IPR000620 GO:0016020|GO:0016021
Ssu4g2128 368 Pfam EamA-like transporter family 202 326 IPR000620 GO:0016020|GO:0016021
Ssu4g2128 368 PANTHER WAT1-RELATED PROTEIN 10 334 IPR030184 GO:0016021|GO:0022857
Ssu4g2128 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 158 - -
Ssu4g2128 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 331 - -
Ssu4g2128 368 PANTHER WAT1-RELATED PROTEIN 10 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2128 Ssu-Chr4 45512689 45519305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2128 1 360 Nodulin-like Gene Family AT5G40240 53.719 1.93e-130 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2128 - - gmx:100805667 593.578