Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2123 ATGTATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATCCAGCATCAAATCCCACAAAAAGATGGTTACATGAGCTACCCACCGCCGATTTTGCCTCCCCCTTCTGCCCCATTTTGGGGTGCATTCCACAAAGAATCAATGTCTTCATCATCtgcatcaccatcaccaccctCACCCTCATCATCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTCCTCATAAAGAACCCTTCTTCCTCAGCATCTGCTCAATCCAATAGGCACCAGGAAATTGCAACCTCAGATGCTCTTCAGAGGCAGCTGCAACAGCTTTTCCATCTCCATGACTCAGGTCTGGACCAGGCTTTTAttgatgcacttcctgttttcTACTACAAGGAGATAAAGGGGTTGAAAGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCCGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTTCATATCACTTGTATAGACACCTGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGGGGAACCCTCCTTACTCCAGGCTTTTCCGTTGAAAATCCAATGTTTGATTTTGATGATTTGAGGGATAATGAGCACTGCCCCTGTAATGGAGAAAATGAATTCACAACTAGGCTGAAAACGGTTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGTAAATTCAGAAGGCTTGATGTGGAGGCAGGAGGAGAGACCAGTAGCAGTAATTTGGATGCGAGAAGATGTTACTCCATGGGATCTTACCAATACGTGCTTGGCAACTCAGACCTCCAGATAACCTTGAGCCATGACCGACAAGGTTGCGATGCTAAGCTTGCAAAAGGAACAGAAAATTTGGAGAGTCTTTCAGTTGATGGGGATATTGAAGCAAAGAAGATTACAAGTGTCACTAAAGGAGAGAGCTATTCTGTTTCCAAAATCTGGCAATGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCTTATGCCCAGATGGGCATGCCATCTTCTCTTAACACTGATTTGCCTTGGATGAGAGAAACAGGAAGGACATGA 1161 0.4289 MYGKWSFDHTHLKMAWIQHQIPQKDGYMSYPPPILPPPSAPFWGAFHKESMSSSSASPSPPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASAQSNRHQEIATSDALQRQLQQLFHLHDSGLDQAFIDALPVFYYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHITCIDTWLLSNSTCPLCRGTLLTPGFSVENPMFDFDDLRDNEHCPCNGENEFTTRLKTVEIEETVVEKGVFPVRLGKFRRLDVEAGGETSSSNLDARRCYSMGSYQYVLGNSDLQITLSHDRQGCDAKLAKGTENLESLSVDGDIEAKKITSVTKGESYSVSKIWQWSKKGKFSVSSYAQMGMPSSLNTDLPWMRETGRT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2123 386 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE ISOFORM X1 9 371 - -
Ssu4g2123 386 SUPERFAMILY RING/U-box 141 210 - -
Ssu4g2123 386 Pfam Ring finger domain 161 204 IPR001841 -
Ssu4g2123 386 SMART ring_2 162 203 IPR001841 -
Ssu4g2123 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 371 - -
Ssu4g2123 386 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Ssu4g2123 386 CDD RING-H2_PA-TM-RING 161 204 - -
Ssu4g2123 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2123 Ssu-Chr4 44878474 44879634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2123 59 358 C3H Transcription Factor Family AT2G18650 41.246 1.24e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2123 - - qsu:112013252 537.339