Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2118 ATGTATAGAATAATATCGACGCCGGCGTCTAAGTTCCGCCAATTCCGGCGACTCCGCTCGAGAGCTCAGACAGCTACAGAGGAGGAACACGCGTTCCAGATCCTATGGCGGTACCAGATCCTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAGGGTGTTCCTTGTGACAAGCCTCCTCGCCCTCTTCGTGGACCCTCTCTACTTCTTCCTCCCCACCGTGGGTGGCCCCGCGTGCTTGCAAGCAGACCCCGGACTCCGCATCATCGTCACCATTCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGCACCGCCTTCGTCGCCCCAAACTCTAGAGTCTTTGGCCGCGGCGAGCTCGTCATGGACGCCCGCCAAATCGCCATGCGTTACTTGAAGTCTGATTTCGTCATTGACCTCGCTGCCACCATCCCTCTCCCCCAGATCGTGATTTGGTTAGTGATTCCGGCGAGTAGAAACGCAAGAACTAACCATGCCAACAACACTCTTgcactttttgttcttattcaGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGACCCAGCGTATTCAGAAAACCACTGGTGTTATCGCCAAGACTCCCTGGATTGGAGCCGCGTACAATCTTGTTCTCTACATGCTAGCTAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAATTTAACTGCTGGAAAACACAGTGCGAACAGGAGAACAGATCGCATACCCTGTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGGCAATACTGGCTAAACATCACGCGTGTAATCAGCAGATGTGATGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGGATGTTCGCAGATGCTTTCCTGAATGATGTTGTCACTTCCAATTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATCTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTTTGCATCATCTTATGCATTGCTGGATTggttcttttttcacttttgattgGAAACATGCAGACGTACTTGCAATCGATGACAGTTCGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAGGAGTGGATGAGGCATCGCCAGTTACCACCAAATTTGCAGGAACGTGTACGTCGTTTTGTTCAATATAAATGGCTTGCGACAAGAGGAGTTAATGAAGAAGCCATACTGCTTTCATTACCTCTGGATCTTCGTCGAGAAATTCAACATCACTTATGTCTTTCCCTTGTGCGGCGTGTCCCCTTCTTCTCGCAAATGGACGATCAACTGCTTGATGCAATTTGTGAACGCCTTGTGTCATCATTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGCTGTTTATCATTAGAGGGCAACTAGAGAGCTCCACAACCAATGGAGGAAGGTCTGGATTCTTCAATTCCATCACACTCCGGCCTGGTGACTTTTGTGGAGAGGAGTTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGTACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAGCTTCAGCATGCATTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGGTATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTCAAAGAGGGTCTCTACTACATGGCATTGCCTGAGAGGGATGGAAGTGGAAATTATGAGGATTATGAGATCGGGGAATCCTCAGGGAATGTGAAAAAGGTTCAGAATCTTGGTGCAACTGTTTTGGCCTCTAAGTTTGCTGCCAATACAAAGAAAGGGAACCATAAGCTTCAAGGTAGTGATCCTGTGCCCCAGTTGTTCAAGCCAGATGAACCTGATTTTTCTGTAGACCATGAAGTTTAG 2073 0.4641 MYRIISTPASKFRQFRRLRSRAQTATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFVDPLYFFLPTVGGPACLQADPGLRIIVTILRSFADLFYVLHMLMKFRTAFVAPNSRVFGRGELVMDARQIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTNHANNTLALFVLIQYVPRLFLIFPLTQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKTQCEQENRSHTLSCFSSYLDCNSLNLPDRQYWLNITRVISRCDAKSKINIKYKFGMFADAFLNDVVTSNFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIILCIAGLVLFSLLIGNMQTYLQSMTVRLEEWRIRKRDTEEWMRHRQLPPNLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKEGLYYMALPERDGSGNYEDYEIGESSGNVKKVQNLGATVLASKFAANTKKGNHKLQGSDPVPQLFKPDEPDFSVDHEV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2118 690 Gene3D Helix hairpin bin 374 441 - -
Ssu4g2118 690 ProSiteProfiles cAMP/cGMP binding motif profile. 450 580 IPR000595 -
Ssu4g2118 690 SUPERFAMILY cAMP-binding domain-like 380 575 IPR018490 -
Ssu4g2118 690 SMART cnmp_10 450 581 IPR000595 -
Ssu4g2118 690 Pfam Ion transport protein 50 377 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu4g2118 690 CDD CAP_ED 450 581 IPR000595 -
Ssu4g2118 690 SUPERFAMILY Voltage-gated potassium channels 42 372 - -
Ssu4g2118 690 Gene3D - 59 373 - -
Ssu4g2118 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 27 687 - -
Ssu4g2118 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 687 - -
Ssu4g2118 690 MobiDBLite consensus disorder prediction 662 690 - -
Ssu4g2118 690 Pfam Cyclic nucleotide-binding domain 473 561 IPR000595 -
Ssu4g2118 690 Gene3D Jelly Rolls 448 568 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2118 Ssu-Chr4 44495290 44499449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2118 32 689 Ion Channels AT5G14870 70.501 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2118 K05391 - gmx:100802812 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2118 4 44495290 44499449 Ssu4g2118 4 44495290 44499449 ECH