Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2115 ATGGCTGCAATATCAATACCTTCTCACATGAAAGCTTGGACCTACTCGGAGTATGGCAAATCCAACGAAGTTCTCAAGTTTAACCACAGCGTGCCTTTGCCTGAGGTGAAGGCAGACCAGGTCCTCATCAAGGTCGCTGCCGCTTCCCTTAACCCCATTGATTATAAGAGAATGGAAGGTCATTTCAGGAACACTGACTCCCCTTTACCTACTGCTCCGGGGTATGATGTTGCTGGAGTGGTGGTTAAAGTGGGAAGTGAAGTGAAGAAATTTAAGGTTGGCGATGAAGTTTACGGTGATATCAACGTGAAAGCTTTGGAATATCCAAAGGTGATTGGCTCTTTGGCTGAGTACACTGCTGCAGAAGAGAGACTATTGGCTCACAAGCCACAGAATCTGAGCATTGCTGAGGCTGCTAGCCTTCCTTTGACACTTGAGACTGCTTATGAAGGCCTTGAACGAACAGGGTTTTCTGCTGGCAAATCTATCCTTGTGCTGGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCCAAGCATGTTTATGGAGCATCTAAGGTGGCAGCTACAGCTAGCACTAGGAAACTGGAATTATTGAGAAATTTGGGAGCTGACTTGCCCATTGATTATACAAAAGAGAATTTTGAAGACCTGCCTGAAAAGTTTGATGTGGTGTTTGATACAGTAGGGCAAACTGAACAGGCATTCAAGGCTTTGAAAGAAGGTGGCAAAGTTGTGACAATAGTACCACCTGGTTTTTCTTCAGCTATCCTTTTCATACTCAGTACTGATGGGGCTATCTTAGAGAAACTAAACCCCTACTTGGAGAGTGGTAAGTTGAAGCCAGTACTTGACCCCAAGAGCCCGTTTCCATTTTCTCAGACTGTTGAAGCATTTTCCCATCTGGAAACAAACAGAGCAACTGGAAAAGTAGTCGTCTATCCCATTCCATGA 960 0.4521 MAAISIPSHMKAWTYSEYGKSNEVLKFNHSVPLPEVKADQVLIKVAAASLNPIDYKRMEGHFRNTDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINVKALEYPKVIGSLAEYTAAEERLLAHKPQNLSIAEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTRKLELLRNLGADLPIDYTKENFEDLPEKFDVVFDTVGQTEQAFKALKEGGKVVTIVPPGFSSAILFILSTDGAILEKLNPYLESGKLKPVLDPKSPFPFSQTVEAFSHLETNRATGKVVVYPIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2115 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Ssu4g2115 319 Gene3D - 152 266 - -
Ssu4g2115 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 285 IPR036291 -
Ssu4g2115 319 CDD MDR_like_2 10 315 - -
Ssu4g2115 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 319 IPR044626 GO:0016628
Ssu4g2115 319 Gene3D - 17 315 - -
Ssu4g2115 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Ssu4g2115 319 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 3 319 - -
Ssu4g2115 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
Ssu4g2115 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Ssu4g2115 319 Pfam Alcohol dehydrogenase GroES-like domain 39 103 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2115 Ssu-Chr4 44383281 44386141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2115 29 231 Monolignol Biosynthesis Gene Families AT3G19450 24.464 1.34e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2115 K18980 - gmx:100817947 575.859