Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2114 ATGGCTTTTTATTACGATAGGAATAAGTGTGCGGCATGCTTCCGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGAGCTCATACCATTCGGTTCATGAACCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGACTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAGGAGTGCAGAGATATATTCGCCTACAGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTTTCTGGAACAAATGCTGGAATAATTGCTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGACTATTGGTGGTGGAGCAAGAGGACCACAAGTAGTTGCACTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTGTGCTTAATCGATGAGCATGAGAACATAATCTTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGCATCAGACCAGAATACCTAAGGGATGCAATGCCAATGAGACAAGTTCAGCGGAGGATTCAAGACTTCCTTTGCAATGGTGAACCTATGTGGACAATTCGGGCAAGAGGTGGAAGAGCCAGAATTCTTGTGGGTCATGGTTTGGATCATGATCTTGAATGTTTGCAAATAGAATATCGAGCagaaaaaataagGGACACTGCAAAATACCCTCCACTGATGAAAACAAGCAAGCTGAGCAACTCACTCAAGTACTTAACACAAACATATCTTGGGCAAGTATCTTTCACATTTTTCTCTATTGATCCTTATGATGATTGTGTTGCAACGATGAGACTCTACATGAGAATGAGATCCCAAGTGCATAAAATACAGGATTACCCTTTGGCGTCTGACTCCCAGAATAGGAATAATTTTGCTTCGTGGAAGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 1059 0.4287 MAFYYDRNKCAACFRQFNKLEHLVEHMRSSYHSVHEPTCGICRKHCRSFDSLREHLIGPLPKQECRDIFAYRGCKFCLKVLDSPNSRRIHQEKCQLSGTNAGIIARFSNLGLRDNLTIGGGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGQVSFTFFSIDPYDDCVATMRLYMRMRSQVHKIQDYPLASDSQNRNNFASWKQSELERMTPEQMLEISRSDYYCWCLDSLYNP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2114 352 Pfam Exonuclease 146 272 IPR013520 -
Ssu4g2114 352 ProSitePatterns Zinc finger C2H2 type domain signature. 10 32 IPR013087 -
Ssu4g2114 352 CDD REX4_like 128 292 IPR037431 GO:0006364|GO:0008408
Ssu4g2114 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 37 IPR013087 -
Ssu4g2114 352 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 348 - -
Ssu4g2114 352 PANTHER OS02G0709000 PROTEIN 6 348 - -
Ssu4g2114 352 Gene3D - 124 313 IPR036397 GO:0003676
Ssu4g2114 352 SUPERFAMILY Ribonuclease H-like 140 298 IPR012337 -
Ssu4g2114 352 SMART exoiiiendus 126 301 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2114 Ssu-Chr4 44356258 44358292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2114 7 349 C2H2 Transcription Factor Family AT3G27970 73.837 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2114 - - aprc:113862359 677.552