Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2112 atgaagtgtttCTTCTTCAAGCACAAACCAAAATCCGACCTTGAATTACCAAAGGTGAATGGAGCAACTAAGTCCACCAGCCCGCTACCATCACCAAGGAGCATAAAAGAATCGTACAAAGAGAAAGAGCacaatttgagaattttcactTTGCAAGAGCTCGTAGATGCTACAAATAGTTTCAATATTAAGCTCTTAATTGGATTCGGGGATTTTGGGGAAGTATATAAGGGAACAATTAGACCTGACCCTGAAGACGGAGtctttcttttttacttcatttGCCTTGGAAAACAAGATTGCAAATTATGCTCGGTGCTGCTCAAGGATTACATTATCTACATAACGAATTGGATGTTCAGGGAGGGGCCAACGGGTGATCATACTGGTAAATCTATCGGGTTCGCACGCTGTTTATCATTGGCTACAGAGGCATATACTGCCCCGGAGTATATTGCAACAGGTCATCTCATAGTTCTGAGTGACATATGGAGTTTCGGTGTGGTACTTTATGAGATCCTCACAGGAAGGAGTGCAGTGGATAGAACCCTTCCAAAAGGGGAACAAAGGCTTATAGAGTGGGTTAAAAAATACCCTGCTAACAGTAGCAGATTCAGCACGATCATGGACCCACGTCTCAAGAACCAATATTCTCTTGGTGCAGCTCGAAAAATAGCCAAGTTGGCAGATAGCTGCTTGAAGATGAATCCTCAAGATAGGCAATCCATGAGTCAGATAGTGGAAAGCTTAAAGCAAGCATTGCAATATTCAGAAACCACAAACACTTCGCACAATATGACTTCTAAATCCCACTCGATATAA 822 0.4039 MKCFFFKHKPKSDLELPKVNGATKSTSPLPSPRSIKESYKEKEHNLRIFTLQELVDATNSFNIKLLIGFGDFGEVYKGTIRPDPEDGVFLFYFICLGKQDCKLCSVLLKDYIIYITNWMFREGPTGDHTGKSIGFARCLSLATEAYTAPEYIATGHLIVLSDIWSFGVVLYEILTGRSAVDRTLPKGEQRLIEWVKKYPANSSRFSTIMDPRLKNQYSLGAARKIAKLADSCLKMNPQDRQSMSQIVESLKQALQYSETTNTSHNMTSKSHSI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2112 273 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2112 273 MobiDBLite consensus disorder prediction 19 33 - -
Ssu4g2112 273 Gene3D Transferase(Phosphotransferase) domain 1 115 272 - -
Ssu4g2112 273 PANTHER OS01G0588500 PROTEIN-RELATED 20 87 - -
Ssu4g2112 273 PANTHER OS01G0588500 PROTEIN-RELATED 119 258 - -
Ssu4g2112 273 SUPERFAMILY Protein kinase-like (PK-like) 35 248 IPR011009 -
Ssu4g2112 273 Gene3D Phosphorylase Kinase; domain 1 33 88 - -
Ssu4g2112 273 MobiDBLite consensus disorder prediction 16 35 - -
Ssu4g2112 273 Pfam Protein kinase domain 141 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2112 273 PANTHER RECEPTOR-LIKE KINASE PLANT 20 87 - -
Ssu4g2112 273 PANTHER RECEPTOR-LIKE KINASE PLANT 119 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2112 Ssu-Chr4 44215633 44217848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2112 141 270 Receptor kinase-like Gene Family AT4G02010 34.615 8.78e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu4g2112 Pkinase 4.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2112 - - sly:101257497 211.846