Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2110 ATGCTTCCACTGCAATTCAGCACCCACCCTCATCACCCTCCATCGCTATTTCTGAGCAGCTCCAACGCTTGTTCATCCTCTCGCCTCCTTTACAACAACAGAAACAAGGTGTACCTTCTTCGCTCCAACGTTGGAACCCTCAACCTTAGGGTTTTAGCAGTGTCTGGTAACTCCGCATTCAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCTCTCGGCATCCGATTCGCTCTCACTGCTGACGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCAGGATAATTATGGTGGGCGACACCTTGAAGAAAGCGGGCGATTCGTCTCAGAACATTCTCGTCGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTCGAGAGGCCCACATTACCTTTTCCCATTCAACTACTGCACAAGATGAATGATCTTGAAATAGTGTTTAATAGAGGTCGAGTTCCTATTGTCACATGGAACAAGACCCTATTGGCATCAAATCTACAACCATCTAGTGAGAGCTGTGGGAATTCGGGATTTTTGATGTTCAACTCAAAGTTTCTTAAACCAAATGGAAGCAAGTTATTGggcaatcaaaatcaacatacCATCACCCATGGTGAGAGAAGCTTCTTTACTGAACACACAACACTACTTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTTTTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGGCTTTTATTACGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGATGTTTCCCTTCATGCAGCATATACTTGGGTCACTGGGATGCACACGTGCAGGCCTGACAGGCCGGCAATCGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGAAAACACGATGGACCTCCCACACATGCTGTTACATTTGTATGGAATGGTCATGAGGGAGAGGATGTAACGTTGGTAGGAGACTTTACTGGAAATTGGAAAGAACCACTCAAGGCAAAGCACCAAGGTGGATCAAGACACGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGAAAGGGgaaatgttaacaatataattGTGATTGGTGAAACTGCCAGTGTCCGGCCTTCTGTTCAGCACCAGCAGAAAGATGCCAACGTTGTCAAGGTGATTGAAAGGCCTTTGAATGAGAAAGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTATTAGATTGGCTCCCAAATAG 1746 0.4278 MLPLQFSTHPHHPPSLFLSSSNACSSSRLLYNNRNKVYLLRSNVGTLNLRVLAVSGNSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNILVEIKDVGDTQKVLNEQTSSFSLVLERPTLPFPIQLLHKMNDLEIVFNRGRVPIVTWNKTLLASNLQPSSESCGNSGFLMFNSKFLKPNGSKLLGNQNQHTITHGERSFFTEHTTLLACVFTEEVCGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVENGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDERGNVNNIIVIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2110 581 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 271 414 IPR029021 -
Ssu4g2110 581 SUPERFAMILY E set domains 445 528 IPR014756 -
Ssu4g2110 581 ProSiteProfiles Dual specificity protein phosphatase domain profile. 281 437 IPR020422 GO:0006470|GO:0008138
Ssu4g2110 581 CDD DSP_laforin-like 280 426 IPR045204 GO:0019203|GO:0046838
Ssu4g2110 581 Gene3D Protein tyrosine phosphatase superfamily 274 541 IPR029021 -
Ssu4g2110 581 Pfam Dual specificity phosphatase, catalytic domain 290 411 IPR000340 GO:0008138|GO:0016311
Ssu4g2110 581 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 43 581 IPR030066 GO:0005983
Ssu4g2110 581 Pfam Glycogen recognition site of AMP-activated protein kinase 448 529 IPR032640 -
Ssu4g2110 581 SUPERFAMILY PDZ domain-like 70 161 IPR036034 GO:0005515
Ssu4g2110 581 CDD E_set_AMPKbeta_like_N 448 527 - -
Ssu4g2110 581 Gene3D Immunoglobulins 435 531 IPR013783 -
Ssu4g2110 581 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 43 581 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2110 133 581 Protein tyrosine phosphatase (PTP) family AT3G01510 68.597 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2110 - - gmx:100814503 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2110 4 44165785 44172647 Ssu4g2110 4 44165785 44172647 ECH