Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2105 atggATAAAAAACAGTGCAACACTTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGACCTGATCTTGATCAACTATATTGCGAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTgGTCTTAAACGTACCGGAAAGAGCTGCCGGCTCAGGTGGCTAAACTACCTCCGTCCCGATGTTAGGAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAACATCTACCCGGAAGGACTGATAATGAGATCAAGAACTACTGGAGGACCAGGATCCAAAAGCACATCAAGCAAGCTGAGAACTTCCAGCAACAGAGTAATTCTGAGATAAATGATCACCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTCCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCAACTCAGTTCCCCACAATCCCTGATCAATCCAGTTGTTGTACCAATGACAACAACTATTGGAACATGGAGGATATCTGGTCAATGCAATTACTGAACGGGgattaa 600 0.4517 MDKKQCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSNSEINDHQASTSQVSTMAEPMETYSPPCYQGMLEPFSTQFPTIPDQSSCCTNDNNYWNMEDIWSMQLLNGD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2105 199 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Ssu4g2105 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Ssu4g2105 199 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Ssu4g2105 199 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Ssu4g2105 199 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 196 - -
Ssu4g2105 199 CDD SANT 73 112 IPR001005 -
Ssu4g2105 199 SMART sant 68 116 IPR001005 -
Ssu4g2105 199 SMART sant 15 65 IPR001005 -
Ssu4g2105 199 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu4g2105 199 Gene3D - 16 68 - -
Ssu4g2105 199 CDD SANT 18 63 IPR001005 -
Ssu4g2105 199 Gene3D - 73 144 - -
Ssu4g2105 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Ssu4g2105 199 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Ssu4g2105 199 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2105 Ssu-Chr4 43732719 43736101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2105 4 199 MYB Transcription Factor Family AT3G01530 59.701 1.09e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2105 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2105 K09422 - gmx:778048 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2105 4 43732719 43736101 Ssu4g2105 4 43732719 43736101 ECH