Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2102 ATGGCCTTTACTGTTGGTAAACCTGGTGATGATTCCATGATCGTTGAGAAGCTCCCAGAGGAGATTAATGAAATGAAGATCAAGGATGAAAAGGAAATGGATGCTACAATGGTGGATGGAAATGGAACTGAAACTGGCCGTATTATTGTGACTACTATTGGTGGTCGACAGGGTCAACCCAAACAGACTATAAGTTACATGGCAGAACGCATTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCGAAGTGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAATCGTGAATTGCAAACAATGCGTCTTCTTGATCATCCCAATGTTGTGTCACTCAAACACTGCTTCTTTTCCACCACAGACAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAACACTATAGCAAGGCAAATCAGCGGATGCCCCTGATATATGTTAAACTTTACACATATCAGATTTGTAGAGCCTTGGCATATATTCACGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCGCAGAATCTACTGGTTAATCCTCATACTCATCAAGTCAAGCTTTGTGATTTTGGAAGTGCAAAAGTTCTGATCAAGGGTGAGCCTAACATATCATATATCTGCTCTCGATATTATCGAGCTCCTGAACTCATATTTGGGGCAACCGAGTATACTACTGCAATTGACATGTGGTCTGTGGGCTGTGTGCTTGCTGAGCTGCTCTTGGGACAGCCTCTGTTTCCTGGAGAAAGTGGAGTTGATCAACTTGTTGAAATTATCAAGgtACTTGGGACTCCAACTCGTGAGGAAATAAAATGCATGAATCCAAATTATACAGAGTTCAAGTTCCCTCAAATCAAAGCTCACCCATGGCATAAGatattcCATAAGCGTATGCCCCCGGAGGCAGTAGATCTTGTTTCAAGGCTTCTCCAATATTCTCCAAATTTACGATGCACTGCTTTGGATGCTTGTGTCCACCCATTTTTTGATGACCTCCGCGACCCTAACACCCGTCTCCCTAATGGGCGTCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAGCAGTGTCCATCCCTTAATTTCTAG 1209 0.4276 MAFTVGKPGDDSMIVEKLPEEINEMKIKDEKEMDATMVDGNGTETGRIIVTTIGGRQGQPKQTISYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLIKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDACVHPFFDDLRDPNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2102 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Ssu4g2102 402 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Ssu4g2102 402 Gene3D Phosphorylase Kinase; domain 1 50 145 - -
Ssu4g2102 402 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 10 398 - -
Ssu4g2102 402 CDD STKc_GSK3 61 353 IPR039192 -
Ssu4g2102 402 Gene3D Transferase(Phosphotransferase) domain 1 146 394 - -
Ssu4g2102 402 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2102 402 SMART serkin_6 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2102 402 Pfam Protein kinase domain 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2102 402 SUPERFAMILY Protein kinase-like (PK-like) 65 375 IPR011009 -
Ssu4g2102 402 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 10 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2102 Ssu-Chr4 43438175 43456112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2102 72 358 Core Cell Cycle Gene Families AT1G76540 34.915 2.04e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu4g2102 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2102 - - jre:108992860 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2102 4 43438175 43456112 Ssu4g2102 4 43438175 43456112 ECH