Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2101 ATGGAGTTTGATCCAAGCTTCTCAGAGAAAATTCCCTACCTTTCTGGAATTTTTCCTGAAAACCACTGCATCAAATCAGAGATCCCCATAGAAGAGAACACTATcttcatgtaccaaaaaaatttcagcCATCTTCAGCACCATCCCCTGAATGAGCCAAACCATGACCCCACTGCTATTTTTGTCACAGAGGGTTCTTCCTCCATCATCACCCCATTATTCTCTTTGTCCTCAACAACCCCTTCTTCAGGTGACTCATCTTCCTACAAACCCACTTACCCCAATGAGTCCCTCAGAGGAGGCTTTGCCAACTCATACTACCCCATGCCTTTTGCACCAAACAGCAATAAAGTTGATCCCATGCAGGGCCACCTCAACACCAACAAGGGCATCTGGGATTTTTCCCAGAAAATTCCCTTTCCCTGTGGTGCAAGTGCAACTTCACAGCCTCAGGTGGGTCCCTCTCTGTCACCATCACTTGCTTTTGGATCAGTCACCATCTCATGCATCATTGGAACATGTAATAATGCTCACAAAGCTGTTGTTGTTAAAATGAAGCAGGTGCAGAGGAAGAGCAATGGCAAAATTCAGCACAAGATTGCCAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGGGTCCTCGTCCAATTGGTGAAACGCTTCGGGATCAAAAAATGGTCTCAGATCGCCAGGTTGCTGAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGATGGCACAATCATCTCCGGCCAAACATTAGGAAGGAATCATGGAGCGAAGAGGAGGACAAAATGCTCATTGAAGCTCACAAGGAAGTTGGGAACAAGTGGGCGGAAATCGCAAGGAGAATGCCAGGCAGGACTGAGAACACCATCAAGAACCACTGGAACGCCACAAAGCGGCGCCAGAACGCCAAGAGGCAGGGGAAGCGCACCACTTCAAAGGGAGCAACCACGCTTCTTCAGAACTACATCAGGCAAGTCACTGCGGCAGAAGAGGCCGAAAAGGAGTTGAAGAAATCCATGAGCAAGATGAACATAAAGGGTGAGAGCAGTTGCACCAACCTCGGTCTCTTTCGGGTTCGGTACGAGAGCTCGGAGGGTGACTTCAGCTCCGAAGATTGGGGCACTCAGACCGAGGAGGATGAGGTTGGGTGGAGTGTGCAGCACCATGTGCCACTTGGTGATAGCTATGTGCCAGTGATGGTGAACTCTGAGGAGATGGCTAGTGGGTCTGCTGTGGAAGATAGCACAATGGATTTTGAGGTTGCAATGGAGATGGCGCCGGAGGTCCAGATGAAGAAGGAAATGGATATTATGGAGATGATCTATAGAAAACCTTAA 1350 0.4807 MEFDPSFSEKIPYLSGIFPENHCIKSEIPIEENTIFMYQKNFSHLQHHPLNEPNHDPTAIFVTEGSSSIITPLFSLSSTTPSSGDSSSYKPTYPNESLRGGFANSYYPMPFAPNSNKVDPMQGHLNTNKGIWDFSQKIPFPCGASATSQPQVGPSLSPSLAFGSVTISCIIGTCNNAHKAVVVKMKQVQRKSNGKIQHKIANIIKGQWSAEEDRVLVQLVKRFGIKKWSQIARLLNGRVGKQCRERWHNHLRPNIRKESWSEEEDKMLIEAHKEVGNKWAEIARRMPGRTENTIKNHWNATKRRQNAKRQGKRTTSKGATTLLQNYIRQVTAAEEAEKELKKSMSKMNIKGESSCTNLGLFRVRYESSEGDFSSEDWGTQTEEDEVGWSVQHHVPLGDSYVPVMVNSEEMASGSAVEDSTMDFEVAMEMAPEVQMKKEMDIMEMIYRKP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2101 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 255 IPR017930 -
Ssu4g2101 449 SUPERFAMILY Homeodomain-like 202 298 IPR009057 -
Ssu4g2101 449 ProSiteProfiles Myb-like domain profile. 252 302 IPR001005 -
Ssu4g2101 449 Coils Coil 323 343 - -
Ssu4g2101 449 SMART sant 256 304 IPR001005 -
Ssu4g2101 449 SMART sant 204 253 IPR001005 -
Ssu4g2101 449 CDD SANT 259 302 IPR001005 -
Ssu4g2101 449 PANTHER MYB DOMAIN PROTEIN 100-RELATED 182 351 - -
Ssu4g2101 449 Pfam Myb-like DNA-binding domain 208 268 - -
Ssu4g2101 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 306 IPR017930 -
Ssu4g2101 449 ProSiteProfiles Myb-like domain profile. 200 251 IPR001005 -
Ssu4g2101 449 PANTHER MYB PROTEIN-RELATED 182 351 - -
Ssu4g2101 449 CDD SANT 208 251 IPR001005 -
Ssu4g2101 449 Gene3D - 258 326 - -
Ssu4g2101 449 Gene3D - 204 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2101 Ssu-Chr4 43358644 43361935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2101 62 330 MYB Transcription Factor Family AT4G18770 42.066 1.61e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2101 Myb_DNA-bind_6 2.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2101 K09422 - ccaj:109799074 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2101 4 43358644 43361935 Ssu4g2101 4 43358644 43361935 ECH
Ssu4g2101 4 43358644 43361935 Ssu8g2489 8 64609753 64617698 ECH