Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2097 ATGAACTCCAAAAACCTGTCCTCAAATCCAAGccacaacaacaagaagaaccCATCATGGGTTCTCTTCACCATAATTCTGCTCTCATCTTTATCCCTCTCACTCTCGGATCCAAGAATCACCGAAGCAGGACTCTCCTGCGGCACAACCAAGGCCCCTCTGAAAGCCAACTACATCCCAAACTTCATCAAGGAAATGGAGAGCCTCTCCCAGTTGGTGACCAACCACAACTGGGGCACTCACTCTGAGAACATTTCAGGCTCGTCCATTCCCATCTACGGCTTCGCCCAATGCTTCCACGACCTGTCCCACACCGACTGCCTCCTCTGCTACGCCGCGAGCCGCACCAAGCTCCCGCGCTGCCTCCCTTCCGTCTCCGCGCGCATCTACCTCGACGGCTGCTTCCTGCGCTACGACAACTACAGCTTCTACTCGGAGGACACCGACCCTTTGAGGGACACAGTGAACTGCACCTCCCAGCTTGGGGTGGATGTTGATGCGGCTCAAAGGTTGGAGCTTGAGGAGAGAGTGGGGAGAGTGGTTGACAGTGTGGCCAACATGGCCGTGGCCAAAGGTGGTAGTGGTGGTTTTGCTGTGGGAGAGGTTAAGGGGGTTTATGCACTGGCACAGTGCTGGAACACTGTTGGGAGTGATGGGTGCAGAGAGTGCTTGAGGAAAGCCGGGAGGGAGGTCAGAGGGTGCTTGCCAAAGAGGGAAGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCAACACAGAAGTTCTACAGTGAAGAAGGTGATGCAGGTGGTGAAAATGGGTCTTTAAGAAGAAAAGGAGTCGTAGTAGCAGAAGTGTTGGCATCAGCTGCAGTTTTAATGCTCGCTCTCTCTGCCTCTTATGTGGCCTTCACAAAattgtcaaagaaaaaaaaagAAAACAATAACCTTGGTCAGATTTCCTCTTCCATAAGCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACATATTATTTCAACCCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGTTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTTGCTGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTTGATGAGTTCTTCAATGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTGTTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTAGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATCTTTGAAAAGAACAGAACTCAGATTCTAAACTGGAAGCAGCGGTTTAATATCATTCTTGGAGCAGCAGAAGGGCTTGCGTACCTTCATGAAGGCACTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGCAATATTCTTCTGGACGAGAATCTCACTGCTAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGTGCTGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTCGAGGGCAACTTACAGATAAAGCTGATGTATATAGTTTTGGAGTACTTGTTCTGGAGATTGTAAGTGGAAGGAGGAATAATGTCTTCAGAGAGGACTCTGGCACGCTTCTACAAACTGTTTGGAAACTTCACCGATCAAACACATTAACTGAAGCTGTTGATCCGTGCTTGGGAGATGATTTTCCTGTAACTGAAGCATCAAGGGTGTTTCAGATTGGATTGCTTTGCACACAAGCTTCAGCTTCCCTAAGGCCATCCATGTCCCAAGTTGTTTGCATGCTAAGTAATTCAAACGTAGATGTTCCTACACCAAATCAACCCCCATTTTTGAACACTGGAGTGCTAGACTCGGATAGCTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGTGTCCTACAGCTACTCAGTGTCCTCTAGTTCACGCAACTCAGATGGGCCATCAAGAAGTGAAGAATCAATTGTCCAAGCTTGA 2031 0.4604 MNSKNLSSNPSHNNKKNPSWVLFTIILLSSLSLSLSDPRITEAGLSCGTTKAPLKANYIPNFIKEMESLSQLVTNHNWGTHSENISGSSIPIYGFAQCFHDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTSQLGVDVDAAQRLELEERVGRVVDSVANMAVAKGGSGGFAVGEVKGVYALAQCWNTVGSDGCRECLRKAGREVRGCLPKREGRALNAGCYLRYSTQKFYSEEGDAGGENGSLRRKGVVVAEVLASAAVLMLALSASYVAFTKLSKKKKENNNLGQISSSISKSSLNYKYETLEKATYYFNPSRKIGQGGAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGAAEGLAYLHEGTKIRIIHRDIKSSNILLDENLTAKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVSGRRNNVFREDSGTLLQTVWKLHRSNTLTEAVDPCLGDDFPVTEASRVFQIGLLCTQASASLRPSMSQVVCMLSNSNVDVPTPNQPPFLNTGVLDSDSSIKSYSTNSFISNALKKIGVSYSYSVSSSSRNSDGPSRSEESIVQA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2097 676 MobiDBLite consensus disorder prediction 656 676 - -
Ssu4g2097 676 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 669 - -
Ssu4g2097 676 Gene3D - 164 256 IPR038408 -
Ssu4g2097 676 Gene3D - 43 143 IPR038408 -
Ssu4g2097 676 Gene3D Transferase(Phosphotransferase) domain 1 413 614 - -
Ssu4g2097 676 Pfam Protein tyrosine and serine/threonine kinase 340 604 IPR001245 GO:0004672|GO:0006468
Ssu4g2097 676 SUPERFAMILY Protein kinase-like (PK-like) 320 635 IPR011009 -
Ssu4g2097 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Ssu4g2097 676 CDD STKc_IRAK 343 605 - -
Ssu4g2097 676 ProSiteProfiles Protein kinase domain profile. 337 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2097 676 Gene3D Phosphorylase Kinase; domain 1 296 412 - -
Ssu4g2097 676 SMART serkin_6 337 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2097 676 ProSiteProfiles Gnk2-homologous domain profile. 151 256 IPR002902 -
Ssu4g2097 676 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Ssu4g2097 676 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 30 669 - -
Ssu4g2097 676 Pfam Salt stress response/antifungal 57 141 IPR002902 -
Ssu4g2097 676 Pfam Salt stress response/antifungal 196 253 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2097 Ssu-Chr4 43228443 43231919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2097 21 502 Receptor kinase-like Gene Family AT5G40380 56.818 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu4g2097 PK_Tyr_Ser-Thr 7.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2097 - - gmx:100790404 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2097 4 43228443 43231919 Ssu4g2097 4 43228443 43231919 ECH