Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2093 ATGCCACAACATCCTCACCATGACTCCTCCTCCGGCGAACCCCACTTCCCTCTGGCCGTGGACGCCGACTATAAAGCCACCGAGTTCCGCCCCTTCACGGCGGCGCGTCCGCACATGCTGGCGTTCCACCTGGCGTGGCTGAACCTCTTCGCGTGCTTCTTCTCCACGTTCTCCATCCCCCCTCTCCTCCCCATCATTTCCGCGGACCTCAACCTCTCCCCATCCGACATGGGCCTGGCGGGGTCGGCCTCCTTCGCGGGCTCCATCCTCTCCCGCTTCCTGATGGGCCCGACCTGCGACCTCCTGGGCCCGCGCGTGGCCTCCGCCGCGCTCTCCCTCCTAACCGCCCCCATCATCCTCGCCACGTCACTCGTCTCCACCCCGAACACCTTCATCGCCGTGCGCTTCCTCTTCGGGTTCTCCCTCGCCAACTTCGTCTCCAACCAGTTCTGGATGACCTCCATGTTCTCCCCCAACACCGTCGCTGTCGCCAACGCCGTCGCGGCCGGCTGGGCCAACGTCGGCTCCGGCGTCACGCAGCTCCTCATGCCCCTCATCTACTCCCTCACCATGTCCCTCTTCAACGTCCCCTCCTCCACCGCGTGGAGACTCGCATTCATAGTCCCCGCGCTCTTCCAAACCTTCACAGGTATTTTGGTGTTAGCGTTCGGGCAGGACCAGCCCCTGGGGAACTACACCAGAACGACGTCGTCTCCGAAGGGGAAAAAGGGCCTTTGGAAGGTTTTGTTGGGGGGGTTGGGGAATTACCGGGGGTGGGTGATGGGGGCGCTCTATGCGGCGTCGTTTGGGGTGGAGCTGACGGTGGATAACGTGATAGCGGGGTATTTTTACGAGAGGTTTGGGTTGGATGTGAAGAGTGCGGGGAGTGTGGCGGCGTGCTTTGGGATGGCGAACGTGTTTTCGAGGCCGCTGGGAGGGGTGGTTTCGGACCGCATGGGCAAGAGGTTTGGGGTGAGGGGAAGGTTGTGGGCTTTGTGGGTGGTGCAAACGGTTGCGGGCTTCTTGTGTGTTCTGCTGGGACGAGTTGATACGCTGGTGAGTTCGGTTTTGGTTATGTGCTGCTTCTCTCTGTTTGTTCAAGCGGCTTCTGGCCTCGTCTTTGGCGTCGTTCCCTTTGTGTCCAAAAGATGCATGACAACAACCTCAACGGGTTGGTCGAGTGGAACAAGACAAGGTCTCGCATTTGAAAAATTGCAGATCACTAGGAGTAATATCAGGAATGACAGGGAGCGGAGGAACGATAGGGGCTGTTGTCACTCAACTGCTGTTGTTTTCGGGCACAAACAACATGTCGAAGCAAACAAGCATATCCCTCATGGGCCTAATGATGATATTATGTTCTCTTCCTGTAACCTTGATCTACTTCCCTCAGTGGGGAGGCATGTTTTGTGGCCCTTCCCCTGA 1425 0.5881 MPQHPHHDSSSGEPHFPLAVDADYKATEFRPFTAARPHMLAFHLAWLNLFACFFSTFSIPPLLPIISADLNLSPSDMGLAGSASFAGSILSRFLMGPTCDLLGPRVASAALSLLTAPIILATSLVSTPNTFIAVRFLFGFSLANFVSNQFWMTSMFSPNTVAVANAVAAGWANVGSGVTQLLMPLIYSLTMSLFNVPSSTAWRLAFIVPALFQTFTGILVLAFGQDQPLGNYTRTTSSPKGKKGLWKVLLGGLGNYRGWVMGALYAASFGVELTVDNVIAGYFYERFGLDVKSAGSVAACFGMANVFSRPLGGVVSDRMGKRFGVRGRLWALWVVQTVAGFLCVLLGRVDTLVSSVLVMCCFSLFVQAASGLVFGVVPFVSKRCMTTTSTGWSSGTRQGLAFEKLQITRSNIRNDRERRNDRGCCHSTAVVFGHKQHVEANKHIPHGPNDDIMFSSCNLDLLPSVGRHVLWPFP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2093 474 Gene3D MFS general substrate transporter like domains 246 401 IPR036259 -
Ssu4g2093 474 SUPERFAMILY MFS general substrate transporter 21 399 IPR036259 -
Ssu4g2093 474 CDD MFS_NRT2_like 42 383 IPR044772 GO:0015112
Ssu4g2093 474 Pfam Major Facilitator Superfamily 46 380 IPR011701 GO:0022857|GO:0055085
Ssu4g2093 474 Gene3D MFS general substrate transporter like domains 35 231 IPR036259 -
Ssu4g2093 474 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 474 IPR020846 GO:0022857
Ssu4g2093 474 PANTHER HIGH AFFINITY NITRATE TRANSPORTER 2.7 9 408 - -
Ssu4g2093 474 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 408 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2093 Ssu-Chr4 42988334 42992831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2093 18 417 Inorganic Solute Cotransporters AT5G14570 57.692 2.64e-166 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2093 K02575 - oeu:111381300 507.294