Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g2089 | ATGGCCTCTTCTAGCTACTCTAATTCTCCCTGTGCTGCTTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCCCCATATTTCCCTCCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTTCTAAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCACGGATAAAAGATCCAGTTTATGGCTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTAGATACCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGGATGGGTGAAGGGGGAGGTTCGTCTCTTGGTCAATCTCCTGGATACTATTATCCTTCTCCATGGAACAATGATCCACTTGGTGGGGATGGTTATCACAGAGGTGACAACAACATGTGA | 492 | 0.4573 | MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDTTNADLIRYTCNEMPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGGDGYHRGDNNM | 163 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g2089 | 163 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
Ssu4g2089 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 151 | - | - | |
Ssu4g2089 | 163 | Coils | Coil | 89 | 109 | - | - | |
Ssu4g2089 | 163 | MobiDBLite | consensus disorder prediction | 119 | 138 | - | - | |
Ssu4g2089 | 163 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Ssu4g2089 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 151 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g2089 | Ssu-Chr4 | 42872034 | 42872525 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g2089 | 4 | 113 | AS2 family | AT3G27650 | 85.455 | 1.07e-69 | 206 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Ssu4g2089 | LOB | 7.5e-43 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g2089 | - | - | var:108328620 | 333.183 |