Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2089 ATGGCCTCTTCTAGCTACTCTAATTCTCCCTGTGCTGCTTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCCCCATATTTCCCTCCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTTCTAAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCACGGATAAAAGATCCAGTTTATGGCTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTAGATACCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGGATGGGTGAAGGGGGAGGTTCGTCTCTTGGTCAATCTCCTGGATACTATTATCCTTCTCCATGGAACAATGATCCACTTGGTGGGGATGGTTATCACAGAGGTGACAACAACATGTGA 492 0.4573 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDTTNADLIRYTCNEMPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGGDGYHRGDNNM 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2089 163 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Ssu4g2089 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 151 - -
Ssu4g2089 163 Coils Coil 89 109 - -
Ssu4g2089 163 MobiDBLite consensus disorder prediction 119 138 - -
Ssu4g2089 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Ssu4g2089 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2089 Ssu-Chr4 42872034 42872525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2089 4 113 AS2 family AT3G27650 85.455 1.07e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g2089 LOB 7.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2089 - - var:108328620 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2089 4 42872034 42872525 Ssu4g2089 4 42872034 42872525 ECH
Ssu4g2089 4 42872034 42872525 Ssu8g2500 8 64802905 64803399 ECH