Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2082 ATGGAAAATGAAGGTGGCTTATGTGATGGGAAAGAAGTTGATCAGTTTCATCAACCCTCTGGTGGTAATGAGGTTGCCATTGCTAATGAGGATGGTCTTTCATGCGGATCAGAGCTCAAAAAGGttgacaaagtaaaaataaaacaagagagTGATTTGTTGTTTGGGGGGGATGCTTCAGAAGGTGCTCTTTGGGATATTTTTCGGAGACAGGATGTACATAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTTAGGCATGTCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCAATGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAGTTTCGCACACTTCCAATAAACCACAGGTCTACTGAGGACAAATTGGAGGTGAAGAAGATGATAATATATGCTATGAAAGATGTGATTGGAAAATTAGAAGCAGCAAGGTCAGGGTAA 639 0.4038 MENEGGLCDGKEVDQFHQPSGGNEVAIANEDGLSCGSELKKVDKVKIKQESDLLFGGDASEGALWDIFRRQDVHKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKSCIKVAMDFVSPENVGECFRLTEEFRTLPINHRSTEDKLEVKKMIIYAMKDVIGKLEAARSG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2082 212 Gene3D Cupin 22 185 - -
Ssu4g2082 212 ProSiteProfiles JmjC domain profile. 1 176 IPR003347 -
Ssu4g2082 212 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 57 207 - -
Ssu4g2082 212 SMART cupin_9 19 176 IPR003347 -
Ssu4g2082 212 Pfam JmjC domain, hydroxylase 63 159 IPR003347 -
Ssu4g2082 212 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 57 207 IPR045109 GO:0032454|GO:0033169
Ssu4g2082 212 SUPERFAMILY Clavaminate synthase-like 64 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2082 Ssu-Chr4 42321542 42339469 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu4g2082 JmjC 1.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2082 K15601 - gmx:100805723 400.593