Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2079 ATGTCCATCACACCTTTCACAGTGAAGGTTCTTGAGCAGTGCAGAATCAGTCCCCCTCCCAACACAGCTCCCACTACCTCTCTCCTCCCCCTAACCTTCTTTGACCTTCCTTGGCTTTTCTTCTCTCCAAGCCAACCCCTCTTTTTCTATGAATTCCCTCACCCAACCTCTCATTTCACAACCACAATAGTCCCAAAACTAAAGCAATCCCTCTCTCTTACACTTCAACATTACTACCCTTTTGCCGGTAGGTTTTTGCCCTCTTCTGATGCCAACAGACCCCATCTCATTTTCACTGATAACAACATGTCAGTTGCATTGACAATCACTGTGTCAAATGGAGACTTTAAACACTTTTGTAACAATCACCCAAGAGATGTCAAAGATTTCCACTTACTTGTGCCCAAATTGGCATCAACCTTTCCATATGAAGGCAAAGAAGAGTTTCCTTTACTAGCTATTCAAGTAACATTGTTCCCGAATGTTGGTATTTGCATTGGCCTTGCCTTTCACCATGTTGTTGCTGATGGGAGGACCTTCCACAATTTCTTCAAGTTATGGGCCTCATATTGCAGCTTAGGATCAGCTTCAAAGTCACTACTGCCATTGTATGATCGAAGTGTGATTATTGATGCAAAGGGCCTTGAAGGGGTTTTCCTGAAAGaatggagaaaaagaagacTAGTGCAGGACATTGCCATAGGTAGAGAAGCCAACTTAGTAGATCTCTCAGGTATGGTTAGAGCCACTTTCTTAATGAGTGCCACTGAAATGGAGAAAATTAAGCGCTTCATTATTAATTGTTGCAAAGTAAAGAATCAGCCTCAGCCTGTTCATTTATCGGCTTATGTGCTAACTTGTGCATTTGTGTGGGTTTGTTTGCTCAAAACCCAACAATGCGTGAATGAGAAAGTGAACCATCAAGACCCCACATACTTTGGATTCATTGCTGGTGGCATGACAAGAGTGGACTATCCAGTGCCAGGGACATATTTGGGTAATTGTGTCGGCTTTGGCAGGGCATCAGTGAGAAGAAAAGAGTTACTTGGAGAAGATGGAATTGTTGTTGCAGCTAGAGCAATTGGAAGCACGGTTAAGAAGCTTGATGCTTCATTTTTTGCTGGGGCTGAGAAATGGATTTTGGATTGGGAGGTGTTGCATGGGTCAGAGCAACATGTGCATGCTACCTGGTCTCCAAAACTGAAGCTTTATGAATTAGATTTTGGGTGGGGGAGGCCCAAGAAAATAGAGGAGATCTCAATTGATTATACAAGAGCATTTTCACTTATACAGAGCAGAGATGTTGAGGGTGGAATTGAGATAGGCTTGACTTTACCAAAGAGTAAGATGGATACTTTCTCCATTTTGTTCACTAAAGGACTTAGTGCTCTTCCATGA 1398 0.4227 MSITPFTVKVLEQCRISPPPNTAPTTSLLPLTFFDLPWLFFSPSQPLFFYEFPHPTSHFTTTIVPKLKQSLSLTLQHYYPFAGRFLPSSDANRPHLIFTDNNMSVALTITVSNGDFKHFCNNHPRDVKDFHLLVPKLASTFPYEGKEEFPLLAIQVTLFPNVGICIGLAFHHVVADGRTFHNFFKLWASYCSLGSASKSLLPLYDRSVIIDAKGLEGVFLKEWRKRRLVQDIAIGREANLVDLSGMVRATFLMSATEMEKIKRFIINCCKVKNQPQPVHLSAYVLTCAFVWVCLLKTQQCVNEKVNHQDPTYFGFIAGGMTRVDYPVPGTYLGNCVGFGRASVRRKELLGEDGIVVAARAIGSTVKKLDASFFAGAEKWILDWEVLHGSEQHVHATWSPKLKLYELDFGWGRPKKIEEISIDYTRAFSLIQSRDVEGGIEIGLTLPKSKMDTFSILFTKGLSALP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2079 465 Pfam Transferase family 8 454 - -
Ssu4g2079 465 Gene3D - 244 464 IPR023213 -
Ssu4g2079 465 PANTHER MALONYL-COENZYME A:ANTHOCYANIN 3-O-GLUCOSIDE-6''-O-MALONYLTRANSFERASE-LIKE 1 463 - -
Ssu4g2079 465 PANTHER - 1 463 - -
Ssu4g2079 465 Gene3D - 7 234 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2079 Ssu-Chr4 42220912 42222309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2079 40 453 Monolignol Biosynthesis Gene Families AT5G48930 22.145 1.23e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2079 - - gmx:100817166 768.844