Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2076 ATGGAGTCACCCAGTAATCACCACGCCGTCGACGGAGATGCCAATGACGTTAGACCCTTTTCCCACAGAGACGACGACGACGACAAGCCCCAACCTCTCACCGGCGACGGCGCCAGTCCCGGAAAGATATTTATAGGGGGTTTAGCGAGAGAAACGACGATTGCCCAGTTCATCAAACACTTTGGTAAATACGGCGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGTTTCGGCTTCATAACCTACGCCGATCCCTCTGTGGTTGACGGAGTTATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAGCGGACGATACCGCGGGGGGCTGTTGGCTCGAACTCGAAGGACTTCAGAACAAAGAAGATTTTTGTTGGTGGAATTCCTTCGACTGTGACCGAAGATGAGTTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGCTTTGGGTTTATCACCTATGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCATCATCCAAGCGCTATAATGACTCTCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGACGGATTTGGTGGTAATTTTGGTATGGGTGACTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCCACTGAGGGTTATGGGGcatatggtggtggtggttccTCTGGTAGTGCCTATGGAAGCAGCTATGATGCCAGCCTAG 1005 0.4896 MESPSNHHAVDGDANDVRPFSHRDDDDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDGVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGTKLSLLELRWKSRRQNQRSQIHQLHHPSAIMTLGLHMVVDMEMLMTDLVVILVWVTIGQVVPMVVGEVLMVALEVNLVGMEDMLVPWGLIEVILHLGMLVDMVEALAEAMILVGMVDPLRVMGHMVVVVPLVVPMEAAMMPA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2076 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Ssu4g2076 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 206 IPR000504 GO:0003723
Ssu4g2076 334 MobiDBLite consensus disorder prediction 1 41 - -
Ssu4g2076 334 Gene3D - 130 196 IPR012677 -
Ssu4g2076 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Ssu4g2076 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 188 IPR000504 GO:0003723
Ssu4g2076 334 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 197 - -
Ssu4g2076 334 SUPERFAMILY RNA-binding domain, RBD 41 189 IPR035979 GO:0003676
Ssu4g2076 334 SMART rrm1_1 42 113 IPR000504 GO:0003723
Ssu4g2076 334 SMART rrm1_1 132 205 IPR000504 GO:0003723
Ssu4g2076 334 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g2076 334 PANTHER TRANSFORMER-2-RELATED 1 197 - -
Ssu4g2076 334 Gene3D - 41 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2076 Ssu-Chr4 42118734 42121964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2076 41 216 Eukaryotic Initiation Factors Gene Family AT1G71770 24.623 6.31e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2076 K12741 - gmx:100813165 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2076 4 42118734 42121964 Ssu4g2076 4 42118734 42121964 ECH