Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2071 ATGGAGAAAGAGGTTGCGGAAAACCTTTGGAATGGTAACACAGAAACGCAAATTCAAGCAGCTGTGGAACTCAGGAAATTCAGCAGGAAGCAGAGGCACAGTTTGGTAGAAAGTGGAGTTATGGTACCTCTAATTTCCATGCTTCATTCTCAAAACTATGAAGCCATTGAAGCTGCTCTGGGTGCTCTACTTAGCATTGCCTTTGGAAGTGAAAGAAACAAGTCTCGGATCATCAAGTCAGGAGCTTTGCCAGTGTTGCTGAATCTCTTCAATTGCCAAAGCCAGAAAGTGGTGGAATTGACAATAGCCACATTGCTAACCATCTCTTCTTGCAACTCAAACAAGGTAGCAATTGCTTCCTCTGGAGCCATCCAACTCTTAGCTCAATTTCTCAATAGCAATAGTACCACTCAGTCCCAGCTTGACACATTAGCTACACTCCACAACCTCTCAACCTGCCAAGAGATTATAACCCCATTCATTGTCTCTTCTGGGGTCATACTTTCCTTGCTTGAACTTATCCACATGTCAGAAAAATCATCCACATTGGTTGAGAAAGCAATTGGGTTGCTAGAACACATTGTCTCTTCATCAAAGAGTGCACTTTGTGAGGCTGCTAGTATTGGGGGAGCAGTTAGGACACTGGTAGAGACTATTGAAGATGGGTCATCTCAAAGCAAAGAGCATGCAGTGGGGACACTGCTCCTTTTTTGCCAAAGCTGTAGAGAAAAATATAGAGGAATGATCTTGAGAGAGGGAGTGATGCCGGGGTTGCTTCAGTTGAGTGTGGACGGAACTTGGAGAGCCAAAAATATGGCTAAAAAATTGTTGCTGCTTCTGAGGGATTGCTCCAATTATAGTTCAACAAGTAAGCAAACTAATCATGAAGTTGTAGAACGGATCATGGAAGAAATTGATGATGCAGAAGGAGAGGAATTGGCAGAGACTACGCTGAGATTGGTAGAGGAGATGGTTGCAAAACTTAGTACTAATCTTTCAAGTTAA 1005 0.4299 MEKEVAENLWNGNTETQIQAAVELRKFSRKQRHSLVESGVMVPLISMLHSQNYEAIEAALGALLSIAFGSERNKSRIIKSGALPVLLNLFNCQSQKVVELTIATLLTISSCNSNKVAIASSGAIQLLAQFLNSNSTTQSQLDTLATLHNLSTCQEIITPFIVSSGVILSLLELIHMSEKSSTLVEKAIGLLEHIVSSSKSALCEAASIGGAVRTLVETIEDGSSQSKEHAVGTLLLFCQSCREKYRGMILREGVMPGLLQLSVDGTWRAKNMAKKLLLLLRDCSNYSSTSKQTNHEVVERIMEEIDDAEGEELAETTLRLVEEMVAKLSTNLSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2071 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
Ssu4g2071 334 Pfam Armadillo/beta-catenin-like repeat 29 67 IPR000225 GO:0005515
Ssu4g2071 334 Gene3D - 3 203 IPR011989 -
Ssu4g2071 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Ssu4g2071 334 Gene3D - 204 319 IPR011989 -
Ssu4g2071 334 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Ssu4g2071 334 SUPERFAMILY ARM repeat 5 311 IPR016024 -
Ssu4g2071 334 SMART arm_5 111 152 IPR000225 GO:0005515
Ssu4g2071 334 SMART arm_5 28 68 IPR000225 GO:0005515
Ssu4g2071 334 SMART arm_5 70 110 IPR000225 GO:0005515
Ssu4g2071 334 SMART arm_5 153 196 IPR000225 GO:0005515
Ssu4g2071 334 SMART arm_5 199 239 IPR000225 GO:0005515
Ssu4g2071 334 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2071 Ssu-Chr4 41893456 41895034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2071 44 282 U-box Gene Family AT1G24330 33.333 1.44e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2071 - - gmx:100811007 555.829