Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2060 ATGGCTAGGAGCTGGCTTATTGACAGTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGTGAATGTCCAAACTGTTattatcatattgataacagtgaTGTTTCTACTGAGTGGCCTGGTTTTCCTTTTGGTGTAAAGTTCAATCCTTCTGATGTAGAACTCTTAGATCATTTAGCAGCAAAATGTGGCATTGGGAACACACAGCCACACGTGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAATTATGTCCATTTCTTTCATAGAACAATCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTAATCATCAACATGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGTAAGACGAAAGCTATAATAGAAAATGGAGTACATAAGGGCTTTAAGaagatcatggttctttatataagatCTAAGAATGGGTCCAAGCCCTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAGGAAGGTCAATATGtggtttcaaaaattttttatcaacaacAAAAGCAGACTGAGAAAAATGAGGAGAATCCAATGGCTGAAGATCCTGACAATATAACATCGCAAACAAGTCCAAAGACTCCAAAACCAAACCCCCCCAATCCACCTCGTGCAGGAAAATATGTTGATTGTGATGATAACATTGATGAAACTGTCCTTCTGTCTTCTGCCCAGGATACCCAGACAATCCCTGGAGAATCACATGCCCCACTATCTGGTAGTCAGGATCAAGACAATACTAGCAATACTGCATGGTTAGCTGGCGAGTCACAGGCTGAGGAAAACACCGAATATGATGGTTTGGATGACATATTATTGTGCAAGGAGATCTTAGATTCTTGTGCTCTGCTAAATGATCCTGGATTGGACTCCACAAATCTCGATGACATTGCATGCTATGCGGACGTGGCTAGAAATGATAATGTATCTTGCGGAATTTCTGTCCTGGATACACTGGAAttggatactcctccagattttgATCTTTCTAATTTGGATTTTTGTTCTCAAGACAGTAGTATCCTTGAGTGGATGGACAGGTTATGA 1197 0.3843 MARSWLIDSGGFAKKVKSTTLSSADQIKDCGAYRECPNCYYHIDNSDVSTEWPGFPFGVKFNPSDVELLDHLAAKCGIGNTQPHVFINEFIPTLEGDQGICYTHPENLPGAKKDGNYVHFFHRTINAYATGQRKRRKINHQHGLTEEHVRWHKTGKTKAIIENGVHKGFKKIMVLYIRSKNGSKPYKSNWVMHQYHLGTEEDEKEGQYVVSKIFYQQQKQTEKNEENPMAEDPDNITSQTSPKTPKPNPPNPPRAGKYVDCDDNIDETVLLSSAQDTQTIPGESHAPLSGSQDQDNTSNTAWLAGESQAEENTEYDGLDDILLCKEILDSCALLNDPGLDSTNLDDIACYADVARNDNVSCGISVLDTLELDTPPDFDLSNLDFCSQDSSILEWMDRL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2060 398 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Ssu4g2060 398 Pfam No apical meristem (NAM) protein 57 197 IPR003441 GO:0003677|GO:0006355
Ssu4g2060 398 MobiDBLite consensus disorder prediction 274 298 - -
Ssu4g2060 398 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 396 - -
Ssu4g2060 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 396 IPR044799 GO:0003700
Ssu4g2060 398 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Ssu4g2060 398 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Ssu4g2060 398 MobiDBLite consensus disorder prediction 219 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2060 Ssu-Chr4 41318042 41322246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2060 36 218 NAC Transcription Factor Family AT1G28470 53.723 9.33e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g2060 NAM 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2060 - - gmx:100780442 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2060 4 41318042 41322246 Ssu4g2060 4 41318042 41322246 ECH