Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2042 ATGCTGCACTCTCAAGGATTAACTCATGGGGATCCAATCTCTAAACAGTTGCTTTCTATGAAGAAGCCAAAAGGAGATGGTGAGCCTTGTGTTGGACCTCTTGTTTGGGGTTATGAGACCACTGCAAAACTTCTGTCCTTGATTGTCTATTTCCTTGGTGGAGCCTCTAATGCTTTAGAAAGGTTAAAGGAAGAACACCAAGagataaggaaaagaaaaaaggagggaGAACTACTAAACTGGGAAGATTATAAGCAAATGGAGTTCACTCAAAAGGTGATGTACGAAGCTATGAGATGTGGTAATGTAGTCAAATATTTGCACAGGAAAGCTGTTCAAGATGTCAAATTCAAAGATTATGTGATACCCGCAGGGTGGAAGGTTCTTCCTGTCTTGTCTTCTGGACATTTGGATCCCACCCTTTTGAAAATCCTTTGGAGTTCAATCCCTTTCGGTGGAATGACTTCGACAAGCAAGAAAGCGGCACCATTTGGTGGGGGTCCACGACTCTGTCCAGGGGCTGATCTAGCAAAAGTGGAGACAGCATTCTTCCTTCATCATCTTGTCCTTAATTATAGGTGGAAAATCAAGCCAGATGATCCCCACTTGCTTTCCCGTACGTGGAATTCACGGGAGGCTGCTATTGGATCTTGA 654 0.422 MLHSQGLTHGDPISKQLLSMKKPKGDGEPCVGPLVWGYETTAKLLSLIVYFLGGASNALERLKEEHQEIRKRKKEGELLNWEDYKQMEFTQKVMYEAMRCGNVVKYLHRKAVQDVKFKDYVIPAGWKVLPVLSSGHLDPTLLKILWSSIPFGGMTSTSKKAAPFGGGPRLCPGADLAKVETAFFLHHLVLNYRWKIKPDDPHLLSRTWNSREAAIGS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2042 217 PRINTS P450 superfamily signature 36 53 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS P450 superfamily signature 162 171 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS P450 superfamily signature 92 103 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS P450 superfamily signature 171 182 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 Pfam Cytochrome P450 158 202 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 Pfam Cytochrome P450 37 140 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 Gene3D Cytochrome P450 28 213 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 Coils Coil 52 79 - -
Ssu4g2042 217 PANTHER CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 34 202 - -
Ssu4g2042 217 PANTHER CYTOCHROME P450 26 34 202 - -
Ssu4g2042 217 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 164 173 IPR017972 GO:0005506|GO:0016705
Ssu4g2042 217 SUPERFAMILY Cytochrome P450 31 204 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS B-class P450 signature 162 171 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS B-class P450 signature 109 136 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2042 217 PRINTS B-class P450 signature 171 182 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2042 Ssu-Chr4 40686933 40692785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2042 31 194 Cytochrome P450 AT5G05690 44.379 7.53e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2042 K12639 - gmx:100791737 292.352