Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2032 ATGTTCCCCACCGTCCCCCTGAGAATGAGAATAGCAAAAATGGCTCACCTTTCATGCTTCCTTCTTTTAGCTCTCTCTCTTCTGATTCCCAACTTCGTTTCCTCCTCAGCGGTTCATGATCCTGTACTGGTTGTACAAGATGTACACAGaaggaTCAATGCCTCTAGAAGAAACTTGGGTTACTTTTCATGTGGAACTGGCAACCCCATTGATGATTGTTGGCGGTGTGACCCAAATTGGGAAAGCAACCGACAAAGGCTAGCAGATTGTGCCATTGGGTTTGGCCGAGACGCATTGGGAGGAAAGAATGGTCGACTCTACCTCGTCACTGACTCAGGTGATGATAACCCAGTGAACCCGAGGCCGGGAACATTGAGACACGCGGTTATACAAGATGAGCCATTGTGGATCATTTTCAAGAGGGACATGGTGATCACCCTCAAGCAAGAGCTCGTGATGAACTCCTTCAAGACCCTTGATGGAAGGGGCGCTAATGTTCACATCGCTGGCGGGGGTTGCATCACCATACATTGTGTGAATAACATCATCATCCACGGCGTTCACATACACGATTGCAAGCCCACGGGGCATGGCTACATAAGAGACTCCCCTCAGCATTATGGGTGGTGGACTGTTTCGGATGGTGATGGTGTGTCCATCTTTAATTCAAGGCATGTGTGGATTGACCATTGCTCGTTGTCTAATTGCCATGATGGTCTCATTGATGCCATCCACGGATCCACGGCTATTACTATCTCCAATAATTACATGACACATCACAATAAGGTCATGCTCTTGGGACACAGTGACTCCTACACACAAGACAAGGACATGCAGGTTACGGTAGCCTTCAACCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGATTAACAATGACTATACTCACTGGGAAATGTATGCCATTGGTGGAAGCGCCAACCCAACGATCAACAGCCAAGGGAACAGGTTTGTTGCACCGGATAACAGGTTTAGCAAGGAGGTAACCAAGCACGAGGATGCTGCCGAGAACGAATGGATGCACTGGAATTGGAGGTCAGAGGGGGACTTGTTCTTGAACGGAGCATTCTTCATCCAATCTGGTGCAGGTGCTTCCTCTGCCTATGCTAGGGAATCAAGTGTGAGTACAAGACCATCCTCACTGGTTGGCTCCATGACCCTCAATGCTGGTGCACTTAACTGCAGAAAGGGCACCCGTTGCTGA 1251 0.4836 MFPTVPLRMRIAKMAHLSCFLLLALSLLIPNFVSSSAVHDPVLVVQDVHRRINASRRNLGYFSCGTGNPIDDCWRCDPNWESNRQRLADCAIGFGRDALGGKNGRLYLVTDSGDDNPVNPRPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTLDGRGANVHIAGGGCITIHCVNNIIIHGVHIHDCKPTGHGYIRDSPQHYGWWTVSDGDGVSIFNSRHVWIDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVINNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAAENEWMHWNWRSEGDLFLNGAFFIQSGAGASSAYARESSVSTRPSSLVGSMTLNAGALNCRKGTRC 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2032 416 PANTHER PECTATE LYASE 18-RELATED 15 413 IPR045032 GO:0030570
Ssu4g2032 416 Pfam Pectate lyase 149 333 IPR002022 -
Ssu4g2032 416 SUPERFAMILY Pectin lyase-like 50 411 IPR011050 -
Ssu4g2032 416 PANTHER PECTATE LYASE 15 413 - -
Ssu4g2032 416 Gene3D - 67 409 IPR012334 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Ssu4g2032 416 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Ssu4g2032 416 SMART amb_all 142 339 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2032 Ssu-Chr4 40276855 40281215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2032 4 416 Polysaccharide Lyase AT5G63180 71.942 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2032 K01728 - gmx:100794814 722.62