Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2031 ATGTGCAACAAGAACAGTCCTTCTTCGGACATTCAAACGACCTCTGTTATGAAGAGGACAAGAAAACCGACTAAAAAAcactcatcttcttcttcttcttgcgctTCGGGttctttttcctcttcctcGTCTTCCTCGTCGCTTAAACCGCTTAAACGCAGGAACAGGACGAAGACGAGGAAGCCCAAGTTCGTGAGTCTGCGTCTTCAGCTATCCGAGCCCAAGAAGATGGCCCAGCCCAAGTCCCAGGCCCAGGCCCAACAGCAGCCGCAGCTGAACCTGTTCCCCCTGCATCCGGAGCACCAGGACATGCAGGAGGAGCAGAACGTGGCTCTGCTGTTCAGCTCCGACGGCGGCGCCACCCTGACCGGGCTGCTGGAGGACGAGTCGGCGACGACGTCGCCTTCGTCGGAGGAGGGGTCGCTGTCGGCGCTGACGTGTGCGGCGGAGGACACCGGGAACTGGCTGGTGAGGAAGGCGATGAGGCGGAGGGAGAGCGAGGAGGGGAGCGAGGAGAGGTGGGTGTGTTACTCGGAGGTGGTGGAGGAGAAGAAGGAGGCGATGGAGGAGGTCACGAGTTACTGCTTCGCGGGGAAGACGACTTCGTTTGGGTTGTTGTCCTTGAAGCTGGATCACCAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCGCTCTACGTCGCGGGGGAGGAGACCCCACAAACTGTCCCTGACTTGCTCAATGGTCTCGTCTTTCATAATAATGCCTTCCTTCCCCATGTTGCGTGGGACGGTTGGGGGAGTGGTGTTGATGGGAACGCATGGAATGTTCCTGAAGATTGTGGGGCTAACAAGACGAAGGTGAAGGAAGAAACGGGTTGGAAGCTGGGGCAGAGAGAGGCAAGTGTGCAGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTCTCTAAGAGGATCCGTTATGAAGTTCGCAAGCTGAATGCTGAGAAGCGACCCAGGATGAAGGTACTATTCCCTATTTTCATTGTTACTTTGCAAAATTTGATTGCTTCTATTCCACTTGCTATAAAACTTCATCATGCAGATAATGTGCATAACACGGGTGAGTTTGTGCTTAAATTGAAGAAATTAGTAATGTACAAAACATGTATCAACTTCCTATCCTTGCCATCTAattgtcaaattaattaa 1170 0.5051 MCNKNSPSSDIQTTSVMKRTRKPTKKHSSSSSSCASGSFSSSSSSSSLKPLKRRNRTKTRKPKFVSLRLQLSEPKKMAQPKSQAQAQQQPQLNLFPLHPEHQDMQEEQNVALLFSSDGGATLTGLLEDESATTSPSSEEGSLSALTCAAEDTGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKEAMEEVTSYCFAGKTTSFGLLSLKLDHQGILNAWSDKGSLYVAGEETPQTVPDLLNGLVFHNNAFLPHVAWDGWGSGVDGNAWNVPEDCGANKTKVKEETGWKLGQREASVQRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKVLFPIFIVTLQNLIASIPLAIKLHHADNVHNTGEFVLKLKKLVMYKTCINFLSLPSNCQIN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2031 389 MobiDBLite consensus disorder prediction 1 88 - -
Ssu4g2031 389 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Ssu4g2031 389 MobiDBLite consensus disorder prediction 27 50 - -
Ssu4g2031 389 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 45 331 - -
Ssu4g2031 389 Pfam CCT motif 292 331 IPR010402 GO:0005515
Ssu4g2031 389 PANTHER CCT MOTIF FAMILY PROTEIN 45 331 - -
Ssu4g2031 389 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2031 Ssu-Chr4 40160184 40163130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2031 206 331 C2C2-CO-like Transcription Factor Family AT1G73870 40.476 4.51e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g2031 CCT 5.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2031 - - gmx:100798231 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2031 4 40160184 40163130 Ssu4g2031 4 40160184 40163130 ECH