Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2030 ATGTTACCATTTGTTCTTTTAGCTTTTCCCATCTTGCTATTATTGTTCTTCTTCCGAAAACACAAAACATCTAAGAAGCCAACCTTTCCACCAGGCCCTAAAGGCGTTCCCTTCTTTGGCAATATTTATCAATTCGATAGCTCTGCTCTCTGTTTGCAACTCTACGAACTCTCAAAAGAATATGGCCCCATCTTTTCCCTTCAACTGATTTCAAGGCAAATCATTGTTGTCTCCTCACCAAAACTGGCCAAGGAGGTAATGAAAACCCATGACCATGAGATCTGTGGCCGACCCTCCCTCACAAGCTCAATGAAATTCTCATATAATGGCCTGGACATGGCATTTTCACCCTACAGAGATTATTGGAGACACACCAAAAAATTTTCCATCATCCATTTCCTTAGCCTCAAGCGTGTCTTAACGTTTTCCTCAATAAGAAAACATGAGGTTACTCTATTGATGGAAAAGATAACCAAACACGCTTCTTGTTCCAAGGTTACCAACTTGCATGAGTCGCTGACGTGTCTAACGAGCGCTATAGTGTGTAGGACTGCTTTGGGTAGAAGGCACGAAGAGGAAGGGATCGAGAGAAGCATGTTCCATGGCCTGCTTAAGGAAGCGCAGGAATTGATGATTTCCAACTTCTACACGGATTATATTCCTTTTGTTGGGAGAGTAGTTGATAAACTCAATGGATTGATGGGTCGTCTTGAGAAATTGTTCAAGGAGTGGGATGGGTTTTATCAGAATGTTATTGATGAACACCTTGATCCTGAAAGGAAGAAACTTGCGGATGAGGAGGATCTAATCGATGCCTTCCTTCAATTGAAGAATGATCGTTCCTTCTCAATGGATCTCACTCCCGCTCACATCAAACCCTTGATGATgAATATAATTTTCGCTGGGACAGATACAATTGCAGCCGCAGTGGTTTGGGCTATGACTGCACTAATGAGGAACCCAAGAGTAATGAAGAAAGCTCAAGAAGAGATTAGAAATATGTTTGGTGGTGGGAAAGGTTTTATAGAGGAAGATGACATCCAAAAGCTTCCTTATCTGAAGGCTGTTATAAGAGAAACAATGAGATTGTTCCCACCAGCGCCTCTGCTTCTACCAAGACAAACGATTAAAAGGTGTAGCCTTGCAGGGTACGAAATTCCAGAGAAGACATTGGTGTATGTGAATGCTTGGGCAGTGCATAGAGACCCAGAAACATGGAAGGAGCCAGAAGAGTTTTATCCTGAGAGGTTCCTAGAGAGCACAATAGATCTTAGGGGATATGATTTTAAGCTGATTCCATTTGGTACTGGCCGAAGGATGTGTCCGGGCATGCATATGGGAATTATCACAGTTGAGCTTGTACTTGCTAATCTTCTGCATTCATTTGATTGGGAAATGCCTCAAGGGATGAAAAGAGAAGACATAGACACTCATGATATGCTTCCAGGATATATCCAACATAAGAAAAATCCTCTCTGCCTAGTTGCTAAGGGGCGAGTCTGA 1503 0.4238 MLPFVLLAFPILLLLFFFRKHKTSKKPTFPPGPKGVPFFGNIYQFDSSALCLQLYELSKEYGPIFSLQLISRQIIVVSSPKLAKEVMKTHDHEICGRPSLTSSMKFSYNGLDMAFSPYRDYWRHTKKFSIIHFLSLKRVLTFSSIRKHEVTLLMEKITKHASCSKVTNLHESLTCLTSAIVCRTALGRRHEEEGIERSMFHGLLKEAQELMISNFYTDYIPFVGRVVDKLNGLMGRLEKLFKEWDGFYQNVIDEHLDPERKKLADEEDLIDAFLQLKNDRSFSMDLTPAHIKPLMMNIIFAGTDTIAAAVVWAMTALMRNPRVMKKAQEEIRNMFGGGKGFIEEDDIQKLPYLKAVIRETMRLFPPAPLLLPRQTIKRCSLAGYEIPEKTLVYVNAWAVHRDPETWKEPEEFYPERFLESTIDLRGYDFKLIPFGTGRRMCPGMHMGIITVELVLANLLHSFDWEMPQGMKREDIDTHDMLPGYIQHKKNPLCLVAKGRV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2030 500 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 Pfam Cytochrome P450 30 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PANTHER CYTOCHROME P450 71B11-RELATED 1 499 - -
Ssu4g2030 500 Gene3D Cytochrome P450 22 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 SUPERFAMILY Cytochrome P450 30 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2030 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Ssu4g2030 500 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2030 Ssu-Chr4 40101316 40108590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2030 16 495 Cytochrome P450 AT4G31500 44.720 1.77e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2030 - - gmx:100803017 815.839