Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2011 ATGGAGAACAAGAAGATGGCGGTGAGCGAAGAACAGAAACGCAGTCCCAGAAACCAGAAGATCCCATTAGCAGATTCCAATGGCCAAAACTTGGCGACCCTTTTCAGCCCAAGGTTCAAATCTGCCGCTGCTATGGCTGGTTGGGATGAAGAGACACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGATAGAGATTCCAAGCACAAGAAGCGCTTTGTTTTGAACTCCAAAACCCCACCCAACAACTCATCAAGGAAACGTAGAGCTCAGAGGACTCCACAGGCACCAATCCCTGTAGCTATTCTTGATCTTGATGAGGAAGAAACTCCCAGAAAAGATAGtgggagaaagaagaaaggaaagaaagttaATGAGGGAAGCAAAGTAGAAGGGGGTGGGAATGAATTGACCGAGAAGAACCCGGGTGTCTCTTCTTCTAGTGCTGCTCTTCCCTGTATTGATAAACTAAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTCCGATCTGCTGCAGACAAGTGTGGCAAAAGGTGCCCAAAATGCAGGCAGTTAATAAGCAATGGACGATCTTGCACTGTGAACACTGTTCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAAGCAAGAAAAGCAGCTGGTGCCTTGAATGGTCGACAACAAGCTCAGTTGAGTCCAGAAACAGCATTTTATGCTAACTTAAGGAATAGAAGCACACAACCATCTGGGGGGGCATCAAGCAGAAGCATGAATTCTAGGAGGAGGggagcaacaacaacaacaacacaggAGGATGAGGATGCGGCACTGGCTAGATGGTTGCAGAGAGAAATTGATGAGCAAAGCCCGGGAACAACTCGCGTGCAGAGAGTGAGGACAAGAAGAGGGATTTCTACTAGCCAACATGAGGATGCAGCTTTGGCTCTGAGGTTGCAGAGAGAAGAATTCATGCAAACTTATAGGGGGAGCCAGGAACAGGCTAGCAGGCTACCTTCATCATCATTAGCTAGAGCGAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGGATTAGTGACAGAAGAAGATAA 1143 0.4514 MENKKMAVSEEQKRSPRNQKIPLADSNGQNLATLFSPRFKSAAAMAGWDEETLLLASLIVEDTPDRDSKHKKRFVLNSKTPPNNSSRKRRAQRTPQAPIPVAILDLDEEETPRKDSGRKKKGKKVNEGSKVEGGGNELTEKNPGVSSSSAALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKRCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAGALNGRQQAQLSPETAFYANLRNRSTQPSGGASSRSMNSRRRGATTTTTQEDEDAALARWLQREIDEQSPGTTRVQRVRTRRGISTSQHEDAALALRLQREEFMQTYRGSQEQASRLPSSSLARANLRAMASRAMNLRISDRRR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2011 380 MobiDBLite consensus disorder prediction 64 149 - -
Ssu4g2011 380 MobiDBLite consensus disorder prediction 1 30 - -
Ssu4g2011 380 SUPERFAMILY RING/U-box 156 227 - -
Ssu4g2011 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 233 IPR013083 -
Ssu4g2011 380 PANTHER - 22 245 - -
Ssu4g2011 380 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Ssu4g2011 380 PANTHER - 313 376 - -
Ssu4g2011 380 MobiDBLite consensus disorder prediction 77 92 - -
Ssu4g2011 380 MobiDBLite consensus disorder prediction 258 289 - -
Ssu4g2011 380 Pfam Zinc finger, C3HC4 type (RING finger) 164 202 IPR018957 GO:0046872
Ssu4g2011 380 SMART ring_2 164 202 IPR001841 -
Ssu4g2011 380 MobiDBLite consensus disorder prediction 1 18 - -
Ssu4g2011 380 PANTHER UNCHARACTERIZED 22 245 - -
Ssu4g2011 380 ProSiteProfiles Zinc finger RING-type profile. 164 203 IPR001841 -
Ssu4g2011 380 PANTHER UNCHARACTERIZED 313 376 - -
Ssu4g2011 380 MobiDBLite consensus disorder prediction 106 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2011 156 253 C2H2 Transcription Factor Family AT5G39550 32.673 6.95e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2011 - - gmx:102666585 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2011 4 39437381 39439605 Ssu4g2011 4 39437381 39439605 ECH