Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2008 aTGGTCGTGGGTGGTTCCTTCCCACTAACTTCGAAGAGGAGAAGGGTCACCAACGTTTGTTCCACCGACATGGATACCGAAGCTGCTAAGGCCAAGCTTGCTGCTGTGAAAGAAAGATTTGGACGAGAGATCCATGTTTTTGAAACATCAGCTCTTTCTTCATCTTCAAATGCTGTGTTTTCCAATGGAGAGGAGACTGATGACTTCTATGAGTTTACTGCTGAAGATTATTACAGACTTCTGGCTACTAAAAGAGAAGATAAATTCTTGAAGACTCGGAAAATCCGAGAAGCAGAAGAGGCAGCTCGTAGGTCAAGAATAACCAAAGCCGTAATTAGAGTTCGCTTCCCTGATAATCACACATTAGAGGCTACCTTCCACCCATCAGAAACACTCCAGAGTTTAGTTGATCTCCTCACTAAAGTGATTGCACAGCCAGAGCAGCCATTTTATATATATACTACTCCGCCTAAGAAGGTGATCAATGACATGTCTCAGGATTTTTATAATGCTGGCTTTTGTCCTGGTGCCATTGTGTACTTCTCATACAACGTCCCAAAAGGTGACAGCACTCATACTGGTCCTTACCTCCAAGAAGAGATCTTGTCTTTGAAGGATTTGAATATTGCCAATGATCAAGGCCAGCAATCCGAGCCTGTGCAGTCAGCACCAGAACCTGCCGCGGCAACGCAAGCCCCTTCGGTTGAAGAACGCAAACCTGCTGAGAAAAAGCTTGTCAAACCAAAGTGGCTAAAAATGTGA 762 0.4449 MVVGGSFPLTSKRRRVTNVCSTDMDTEAAKAKLAAVKERFGREIHVFETSALSSSSNAVFSNGEETDDFYEFTAEDYYRLLATKREDKFLKTRKIREAEEAARRSRITKAVIRVRFPDNHTLEATFHPSETLQSLVDLLTKVIAQPEQPFYIYTTPPKKVINDMSQDFYNAGFCPGAIVYFSYNVPKGDSTHTGPYLQEEILSLKDLNIANDQGQQSEPVQSAPEPAAATQAPSVEERKPAEKKLVKPKWLKM 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2008 253 ProSiteProfiles UBX domain profile. 105 181 IPR001012 GO:0005515
Ssu4g2008 253 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 10 253 - -
Ssu4g2008 253 CDD UBX2_UBXN9 110 183 - -
Ssu4g2008 253 Gene3D - 99 182 - -
Ssu4g2008 253 SUPERFAMILY Ubiquitin-like 85 181 IPR029071 -
Ssu4g2008 253 MobiDBLite consensus disorder prediction 209 253 - -
Ssu4g2008 253 Pfam UBX domain 108 171 IPR001012 GO:0005515
Ssu4g2008 253 MobiDBLite consensus disorder prediction 236 253 - -
Ssu4g2008 253 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 10 253 IPR044232 GO:0032984|GO:0051117
Ssu4g2008 253 MobiDBLite consensus disorder prediction 209 228 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2008 22 138 C2H2 Transcription Factor Family AT2G01650 30.579 3.93e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2008 K15627 - gmx:100818386 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2008 4 39360350 39366689 Ssu4g2008 4 39360350 39366689 ECH