Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2003 ATGGCTACTGGTCTCGTTCCGTTCTTTTTAATGGTTCTTGTGCAATTGGTCTATGCAGGGATGAATATTACTTCAAAGCTTGCACTACAATCTGGCATGAACCCTCTTATCCTTGTTGCTTATCGACAACTCTTTGCGACTGTGGCCATTGCTCCCTTTGCTTATTGGTTCGaatgGAATACACTTCCCAGGATGACAAAGCCTCTTATGCTTCGGATATTAATATCCTCCGTGGCAGGAGTTACAGGAAATCAGATTCTATTTTCGGTGGGGCTAAAATATTCAACAGCTACAATTGCATGTGCACTGACCAATTTGATCCCAGCTTTCACTTTTGTCCTTGCACTCATCTTCAGACAAGAGAAATTGAAAATCATGAAGAGGGCTGGCTTAGCAAAGGTATTCGGGACAACATTGTGTGTGGGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCAAATCAAGTATTCACTGGAGATATGCAGAGGAAATGGAAGGAACTAGCTCTTCTGGCAAAGCAAGCATGTTTATAGGCCCTCTAGCCTTAATTGGTTGCATCCTTGTTTGGTCAGCATGGCTCATAATTCTAGTAAGCatcattataattatcttaactgctttttctctctatattaATCATTATATACTTGTTTTCCCGTTTCAGACAGACATAAGCAAAAAGTTTCCAGCTCCTTACACGAGCACAGGCTTAATGTGTTTCTTGGCAACCTTTCAATGCATGGGCATTGCCTTGTGTTTTGACCACAGCGCCTCAGCTTGGTCACTCCACAATGCTATCAGACTTTCCTCTGCTCTTTATGCGGGAATAATTTGCACTGGGTTAGCGTATTGCCTCCAGTCGTGGACCATTGAGAGGAAAGGCCCTGTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTAAGCTGGGCCTTGCTTAGGGAGAAATTATACGTTGGAACtGCCATTGGGTCTCTCTTGATAGTTTTGGGGCTCTATTCTGTTCTTTGGGGAAAGAGTGAAGAGGTGAATGAGAAAGATGGTACTGAAGTGATGGTTAAAGAGGCAATCAAGGATAATGAGAATGATCCGAAGAATGACATGGAATTGCAATCCAATGGTAATCATCGTGTTATTACTTGA 1173 0.4135 MATGLVPFFLMVLVQLVYAGMNITSKLALQSGMNPLILVAYRQLFATVAIAPFAYWFEWNTLPRMTKPLMLRILISSVAGVTGNQILFSVGLKYSTATIACALTNLIPAFTFVLALIFRQEKLKIMKRAGLAKVFGTTLCVGGALLLSFYHGKTIGLGKSSIHWRYAEEMEGTSSSGKASMFIGPLALIGCILVWSAWLIILVSIIIIILTAFSLYINHYILVFPFQTDISKKFPAPYTSTGLMCFLATFQCMGIALCFDHSASAWSLHNAIRLSSALYAGIICTGLAYCLQSWTIERKGPVYVSVFTPLQLVLTAILSWALLREKLYVGTAIGSLLIVLGLYSVLWGKSEEVNEKDGTEVMVKEAIKDNENDPKNDMELQSNGNHRVIT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2003 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 149 - -
Ssu4g2003 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 350 - -
Ssu4g2003 390 MobiDBLite consensus disorder prediction 371 390 - -
Ssu4g2003 390 Pfam EamA-like transporter family 230 346 IPR000620 GO:0016020|GO:0016021
Ssu4g2003 390 Pfam EamA-like transporter family 8 147 IPR000620 GO:0016020|GO:0016021
Ssu4g2003 390 PANTHER WAT1-RELATED PROTEIN 222 360 - -
Ssu4g2003 390 PANTHER WAT1-RELATED PROTEIN 5 201 - -
Ssu4g2003 390 PANTHER WAT1-RELATED PROTEIN 222 360 IPR030184 GO:0016021|GO:0022857
Ssu4g2003 390 PANTHER WAT1-RELATED PROTEIN 5 201 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2003 Ssu-Chr4 39181213 39183519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2003 3 385 Nodulin-like Gene Family AT1G09380 50.515 1.22e-129 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2003 - - gmx:100811613 554.288