Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1986 ATGGCCGTAATAATGAGGGGTGAGATGTTTACACGCCTTGGTAAACTTAGTGATCGTTTTCCTCGACCATATGCAAATAAAGCACCTGCTAGGTTTACTAATGGAAGAGCTTATCCTCCATATATAAGTCTTATTACCAAAgccCGTCACAATGGTCAGACCTATGTTTTTGCCTTTCTAACAGGTTATCGTGACCCACTTGCCAGTGTTTCGaTAAGAGAGGGACTTCATTATAATCCTTATTTTCCTAGTGAAGCAATTGCCATGcctaaaatgattaataatggTGCTATGGAATACGAAGATGGTACCCCTACTACGAAAGGTCAAGAGCAGATGACACGCCCACATCAGCATATGGGGCCCTTGTACATTGAGTTTGTCAAACATATGTTGCGAAACCATAAAGCATGGCAAGTTTACTTTAATAGTCAATAG 438 0.3881 MAVIMRGEMFTRLGKLSDRFPRPYANKAPARFTNGRAYPPYISLITKARHNGQTYVFAFLTGYRDPLASVSIREGLHYNPYFPSEAIAMPKMINNGAMEYEDGTPTTKGQEQMTRPHQHMGPLYIEFVKHMLRNHKAWQVYFNSQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1986 145 PRINTS Cytochrome C1 signature 37 61 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 PRINTS Cytochrome C1 signature 75 86 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 PRINTS Cytochrome C1 signature 86 105 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 PRINTS Cytochrome C1 signature 4 24 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 Gene3D - 3 115 IPR036909 GO:0009055|GO:0020037
Ssu4g1986 145 PANTHER CYTOCHROME C1 6 110 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 Pfam Cytochrome C1 family 6 110 IPR002326 GO:0009055|GO:0020037
Ssu4g1986 145 SUPERFAMILY Cytochrome c 7 111 IPR036909 GO:0009055|GO:0020037
Ssu4g1986 145 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 6 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1986 Ssu-Chr4 38508032 38513260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1986 6 110 Chloroplast and Mitochondria Gene Families AT5G40810 74.286 1.40e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1986 K00413 - gmx:100777056 178.718