Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1982 ATGAGCACAGATACTGCTTCTACTGGAGTTTTGAGTACAGTTTATTGGCCTGGAGGCTTACAGTTTGTTCCTAAGGGATGGACTCACAGCATCGAGGAGAAGACATTGCAAATAGGAGTGCCTGCAAAAGGTGCATTTACTGAGTTTGTGAATGTGACATATTATAAGAACAGGAATAAAACTACTATCACCGGATTCTCAATCGATGTCTTTAAAGCAGCCGTTAATAATTTGCCTTATGACTTGGAATTCAAGTTTGTTCCCTTCAATGGGTCTTATGATGAAATGGTAGAGCAAGTTTACCATAAgGTATTTCCCAAGGGTTCCACTCTGGCCACCGACATATCTGAGGCATTGCTGAAAGTGATAGAGAGTGGAGTAACAGAACAACTAGAAAAAGATATGCTATCAATAGGAAGAAATGCCAGTTGTTCTCCTTCAGAGGGCAAGGCAAAAGATGGGTCCTCAACAGGATTTCAGCCTTTCCTTGGCCTGTTTTACATCTGTTCTATTGTTGCTATTCTGgcattgttatataatatgatttgttTGTTCATGAAGAATGTAGAGACCTTCACTAGCTACATACATGtaacattaacacaattaaaGAGAATATGGAGATGGACAACCACATATTTTGCTCTGAGCTGTTCAAGACTCCAATCAGGGAGTATGAGAAGTGTAAGTACTGCCACAGTAACAAGAAATGCAGAGATGACAGCCATTAATAGTCAGCAAGACGGTGGTTGTTGA 756 0.3876 MSTDTASTGVLSTVYWPGGLQFVPKGWTHSIEEKTLQIGVPAKGAFTEFVNVTYYKNRNKTTITGFSIDVFKAAVNNLPYDLEFKFVPFNGSYDEMVEQVYHKVFPKGSTLATDISEALLKVIESGVTEQLEKDMLSIGRNASCSPSEGKAKDGSSTGFQPFLGLFYICSIVAILALLYNMICLFMKNVETFTSYIHVTLTQLKRIWRWTTTYFALSCSRLQSGSMRSVSTATVTRNAEMTAINSQQDGGC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1982 251 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 104 214 - -
Ssu4g1982 251 SUPERFAMILY Periplasmic binding protein-like II 10 101 - -
Ssu4g1982 251 Gene3D - 28 105 - -
Ssu4g1982 251 PANTHER GLUTAMATE RECEPTOR 104 214 - -
Ssu4g1982 251 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 102 - -
Ssu4g1982 251 PANTHER GLUTAMATE RECEPTOR 4 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1982 Ssu-Chr4 38426613 38428856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1982 7 101 Ion Channels AT5G11180 45.098 2.36e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1982 - - gmx:100778941 233.802