Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1981 ATGGTCTCTAGCGCTAGGTTTCTCCAAGAATCTTGTCACACATCAGCTAACAGAGATGAACACAGATACTGCTTCTACAGGAGTTTGAGTACAGTTTATTGGCCTGGAGGCATACAGTTTGTTCCTAAGGGATGGACTCAGAGCACCGAGGAGAGGACACTGCAAATAGGAGTGCCTGCAAAAGGTACCTTTACTCAGTTTGTGAATGTGACATATGACCAGAACAGGAATAAAATTTCCATCAGCGGTTTCTCAATCAATGTCTTTAAATCAGCCGTTAATAATTTGCCTTATGACTTGAAATACGCATTCGTTCCCTTCAATGGGTCTTATGATGAAATGGTAGAGCAAGTCTACAATAAGGTATTTCCCAAGGGTTCCACTCTGGCCACCAACATATCCGAGGCATTGCTGACAGTGATAGAGAGTGGAGAAACAGAACAACtagaaaatgtatataatatgatttgttTGTTCATGAAGAATGTAGAGACCTTCACTAGCTACATACATGTAACAATAACACAATTAAGGAGAATATGGAAATGGACAACCACATATTTTGCTCGGAGCTGTTCAAGACTCCAATCAGGGAGCATGAGAAGTGTAAGTACTGCCACAGTAACAAGAAATGCAGCGGAGACAGTAATTAATAGTCAGCAAAGCACAGTGGTTGGTGAGCTTATTGATATAGTATTGGCTGCTCATGCTTCCTGA 717 0.4045 MVSSARFLQESCHTSANRDEHRYCFYRSLSTVYWPGGIQFVPKGWTQSTEERTLQIGVPAKGTFTQFVNVTYDQNRNKISISGFSINVFKSAVNNLPYDLKYAFVPFNGSYDEMVEQVYNKVFPKGSTLATNISEALLTVIESGETEQLENVYNMICLFMKNVETFTSYIHVTITQLRRIWKWTTTYFARSCSRLQSGSMRSVSTATVTRNAAETVINSQQSTVVGELIDIVLAAHAS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1981 238 SUPERFAMILY Periplasmic binding protein-like II 28 121 - -
Ssu4g1981 238 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 122 154 - -
Ssu4g1981 238 PANTHER GLUTAMATE RECEPTOR 122 154 - -
Ssu4g1981 238 PANTHER GLUTAMATE RECEPTOR 22 120 - -
Ssu4g1981 238 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 120 - -
Ssu4g1981 238 Gene3D - 46 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1981 Ssu-Chr4 38405697 38407838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1981 27 119 Ion Channels AT5G11210 43.000 1.03e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1981 - - gmx:100778941 169.859