Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1960 ATGCTCAGAGTTGGTTCAATGAGATATTTTTACCTCTATCTTGTGGTTCTTACCTGGTTTTTGTCCATCTTCAGTACCCATGAACTACAACTTGCTCAGACCCAAATTCTGTTACAGTTAAGGAAGTATCTGGAGTACCCAAACTCTCTGCAAATGTGGGAAAATTACTATGGAGACCTTTGTAGCCTTCCTCCATCTGCACATATGAGCCTTAAGTGTGAGGGTAATTCAGTAACTGAGCTTAAAATTATGGGAGATAGAGCTGTGAAGGTTGACAAGTTCCATGGATATGCAGTTCCTAATCAGACACTGTCACTGAGCTTCTCTATTGATTCTTTTGTCACCACATTGACAAGGTTAACAAACTTAAGGGTCCTTCGATTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAAATTCATAGGCTGTCTTTGCTTGAAGTTTTGGATATGAGCTTAAATTTCTTATATGGTTCAGTGCCACCAAGAATGTCTACAATGGTCAAGCTTCATACACTGACACTAGATGGCAATTATTTGAACAGCACAATGCCTGATTGGTTTGATTCTTTGTCTAATCTAAATGTCTTGAGTTTGAAGTGCAACCACTTAAAGGGCTCATTCCCCTCCTCACTATGCAAAATTAGGAGCCTTGCTGATATTTCCTTGTCCCACAATGAGTTGTCTGGTGGATTGCCTGATCTCACTGCTCTCTCTGGCCTACATGTActtgatttaagagaaaatcATTTGGATTCTGAACTGCCACTGATGCCTAAAGCAGTGGTCACAATTCTGCTAAGCAAAAATTCTTTTTCAGGTGAGATACCAAACCAGTTTGGTGAATTGGGTCAGCTTCAACATCTAGATCTTTCATCAAATCATCTCAGTAGGATGCCCCCATCTGCCTTGTTCTCTTTGCCAAACATTAGCTATTTGAATTTAGCCAGCAATGAGCTAAGTGGGTCCTTTCCACACAAACTAAAATGTGGCAGCAAACTTGGGCTTGTGGATATCTCTAGTAACAAGTTAAATGGAGAACTTCCTTCTTGCTTGGCCAATACATCGGGTAAAAGAGTTGTTAAATATGGTGGAAACTGTTTATCTGTTGATTCTCAACCTCAGCGCCAAGGGACTTATTGTAAAGAATCCAGTTCAGGAAGGAAGAACTTCTGGAAATGGAAAATAGCTGCAGCAGTTGCCATGATTATTGTAATTGGTTTTGTACTTTCAGCTTTTGGAGTTCTCttatatagaaaatatcatTCAAGGGAGATGTCTAGGCATGAAATGTTGCCTAAGGTTGGTCAAGATAACTCAACTACAGGAGTTTCTTCTGAACTCCTTGCTAGTGCTAGATTCATTTCTCAAGTAGTGAAGCTAGGGACACAGGCTACTCCTACCTGTAGACAGTTTTCAATTGAAGAGTTGAAGGAAGTCACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGCTCCTTAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGGTTGTATGTGGTGATAAGATGTCTGGCTCTGTCAAAGAAATGCTCCATACAAAATCTTAAAGCTCGGTTGGATTTACTCTCAAAGATTCACCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGATGGACAAGATGATTCTAGTGGCCTCAAACTTCATCTTGTATATGAGTATGTGCCAAATGGGAATTATTGTACCCATCTGTCAGAATTTTCATCAGACAAGGCACTAAAGTGGTCTGATAGATTGTCTATTCTAATTGGAGTTGCCAAAGCAGTGCATTTTTTACATACTGGAGTTATACCGGGTTGTTTTACAAACCAACTAAAGACACACAATGTTTTACTTGATGAGCATCACATTCCCAAACTAAGTGACTATGGTATGTCCATGATCGCTGCGGAGATCGAATACTATGAGatGAATACCAACGATTTGTTGTTCTGTTCTTTCTCTTGCAGCCAAAGAGAAAAATTAGAAGATGATGTCTATAATTTCGGATTGATATTGTTTGACTCACTTGTTGGACCCATAGCAAGCGAGAAAGGAGAGGAATTTTTTCTTGATGAAAAGTGGGACCTGGTGTTGTGA 2121 0.3932 MLRVGSMRYFYLYLVVLTWFLSIFSTHELQLAQTQILLQLRKYLEYPNSLQMWENYYGDLCSLPPSAHMSLKCEGNSVTELKIMGDRAVKVDKFHGYAVPNQTLSLSFSIDSFVTTLTRLTNLRVLRLVSLGIWGPLPDKIHRLSLLEVLDMSLNFLYGSVPPRMSTMVKLHTLTLDGNYLNSTMPDWFDSLSNLNVLSLKCNHLKGSFPSSLCKIRSLADISLSHNELSGGLPDLTALSGLHVLDLRENHLDSELPLMPKAVVTILLSKNSFSGEIPNQFGELGQLQHLDLSSNHLSRMPPSALFSLPNISYLNLASNELSGSFPHKLKCGSKLGLVDISSNKLNGELPSCLANTSGKRVVKYGGNCLSVDSQPQRQGTYCKESSSGRKNFWKWKIAAAVAMIIVIGFVLSAFGVLLYRKYHSREMSRHEMLPKVGQDNSTTGVSSELLASARFISQVVKLGTQATPTCRQFSIEELKEVTRNFDLSTYIGEGSLGKLYKGKLENGLYVVIRCLALSKKCSIQNLKARLDLLSKIHHPNLVSLLGHCIDGDGQDDSSGLKLHLVYEYVPNGNYCTHLSEFSSDKALKWSDRLSILIGVAKAVHFLHTGVIPGCFTNQLKTHNVLLDEHHIPKLSDYGMSMIAAEIEYYEMNTNDLLFCSFSCSQREKLEDDVYNFGLILFDSLVGPIASEKGEEFFLDEKWDLVL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1960 706 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Ssu4g1960 706 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Ssu4g1960 706 Pfam Leucine rich repeat 265 321 IPR001611 GO:0005515
Ssu4g1960 706 SUPERFAMILY Protein kinase-like (PK-like) 467 685 IPR011009 -
Ssu4g1960 706 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Ssu4g1960 706 Gene3D Phosphorylase Kinase; domain 1 457 568 - -
Ssu4g1960 706 SUPERFAMILY L domain-like 33 373 - -
Ssu4g1960 706 Gene3D Transferase(Phosphotransferase) domain 1 569 703 - -
Ssu4g1960 706 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 5 694 - -
Ssu4g1960 706 PANTHER OS07G0166700 PROTEIN 5 694 IPR045272 GO:0004714|GO:0006468
Ssu4g1960 706 Gene3D Ribonuclease Inhibitor 31 261 IPR032675 -
Ssu4g1960 706 Pfam Protein tyrosine and serine/threonine kinase 487 681 IPR001245 GO:0004672|GO:0006468
Ssu4g1960 706 ProSiteProfiles Protein kinase domain profile. 485 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1960 706 SMART LRR_typ_2 239 262 IPR003591 -
Ssu4g1960 706 SMART LRR_typ_2 284 307 IPR003591 -
Ssu4g1960 706 SMART LRR_typ_2 168 191 IPR003591 -
Ssu4g1960 706 SMART LRR_typ_2 192 216 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1960 Ssu-Chr4 37224429 37228335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1960 12 700 Miscellaneous Gene Families AT5G14210 56.980 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Ssu4g1960 PK_Tyr_Ser-Thr 4.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1960 - - gmx:100813412 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1960 4 37224429 37228335 Ssu4g1960 4 37224429 37228335 ECH