Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1956 ATGGGCACAGTAGAAATGATCATTGCATTCCACATGAGGGCTTTGGTATTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACTTCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGTGTCACACAACCAATGTGGAACATTTGCACTCTTTCTCACAAACTCTTACTACTCCTCTCTCTCCAACCTCACCTCTTACTTGGGACTCAACAAGTTTGTGATAGCACAAGCAAATGGATTCTCTGCTGACACTGAGTTCCTCTCCCAGGACCAACCCcttctgataccaattgattgCAAATGCAAAGATGGCTTCTATCAGGCTGAGTTAACCAAAACTACCATCAGAGGAGAGAGCTTCTATGCCATTGCTCAATCACTAGAGGGCTTGACAACCTGCAAGGCTATCTGGGACAACAACCCAGGTGTGTCACCTTGGAATCTTGATGACAAAGTCAGATTGATTGTCCCATTGAGATGTGCCTGCCCATTTTCATCTCAAGTTAGACCACAACCAAAGCTTCTGCTTTCTTATCCTGTAAGTGAAGGTGATACAATTTCCAATTTGGCCTCAAAGTTCAATATTACTAAAGAAGCTATTGTTTCTGCTAATAACATATCATCACAAGGCCTTGGGACTAGAAACCTTGCACCCTTTGCCTCTATTCTCATTCCTCTTAATGGTAAGCCTATCATTGGTCCTTTGGTTAAACCCAAGCAACCCAATTCTGGCTTTCAAACAACCTGCATCCCAGTGACAAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTATGTATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCAcaagaaggaggaggagaattCATGCAAAGGAGATATGGAGCTGCAACATCTGAATCAAAGTGTGAGAACCACGTCAACTGGTGACAACAAAGTTTCATTTGAGGGGTCTCAGGATGCTCTTGATGTGAAAATTGTCGATGCCACATCGCAGAAGATGTTGCTGGAGACATACACCATTGATGATATGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGGTCAGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAAAAGAACAAAGGCAGAAGCAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTTAGGCTTCTTGGAACAACAAGCATGTTAGAGGGGAAGGAGCAAGAGTCATTTCTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCATCATGTTATGAGTCCAAGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGGTGTGTTGAGAATGACACTGAGGACCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTCTGTTGGAAGTGTTGTCTGGTCAAACACCTATAAGCAGGTCCAATGAGAAGGGACAAGGAAGTATTTGGCTTACAGATAAAATCAGGTCCATTTTGGTGTCTGAAAATGTGAATGAACTAAGGGAGTGGATAGACAGTGCATTAGGGGAGAGCTATTCATTTGATGCAGCTGTGACACTAGCCAATATGGCAAGAGCTTGTGTGGAGGAAGATTCTTCTTTGAGACCAAGTGCAAGGGAAATCGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCACAAGGGGAACAACACATGTTAATGTGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAATCTGTGA 2061 0.427 MGTVEMIIAFHMRALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENVSHNQCGTFALFLTNSYYSSLSNLTSYLGLNKFVIAQANGFSADTEFLSQDQPLLIPIDCKCKDGFYQAELTKTTIRGESFYAIAQSLEGLTTCKAIWDNNPGVSPWNLDDKVRLIVPLRCACPFSSQVRPQPKLLLSYPVSEGDTISNLASKFNITKEAIVSANNISSQGLGTRNLAPFASILIPLNGKPIIGPLVKPKQPNSGFQTTCIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFIRLKHKKEEENSCKGDMELQHLNQSVRTTSTGDNKVSFEGSQDALDVKIVDATSQKMLLETYTIDDMRKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKAEAVSKIDLGLFHDALHHHPNILRLLGTTSMLEGKEQESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMSPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRSNEKGQGSIWLTDKIRSILVSENVNELREWIDSALGESYSFDAAVTLANMARACVEEDSSLRPSAREIVEKLSRLVEELPQGEQHMLMCESSSKPLVKAVENNL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1956 686 Gene3D LysM domain 185 234 IPR036779 -
Ssu4g1956 686 Pfam LysM domain 187 233 IPR018392 -
Ssu4g1956 686 ProSiteProfiles Protein kinase domain profile. 319 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1956 686 Coils Coil 679 686 - -
Ssu4g1956 686 ProSiteProfiles LysM domain profile. 185 233 IPR018392 -
Ssu4g1956 686 CDD LysM 186 217 IPR018392 -
Ssu4g1956 686 PANTHER PROTEIN LYK2 7 683 - -
Ssu4g1956 686 SMART LysM_2 186 234 IPR018392 -
Ssu4g1956 686 Gene3D Phosphorylase Kinase; domain 1 343 441 - -
Ssu4g1956 686 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 683 - -
Ssu4g1956 686 Gene3D Transferase(Phosphotransferase) domain 1 442 674 - -
Ssu4g1956 686 Pfam Protein kinase domain 378 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1956 686 SUPERFAMILY Protein kinase-like (PK-like) 351 654 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1956 Ssu-Chr4 37151898 37153958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1956 42 680 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.476 1.96e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu4g1956 Pkinase 5.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1956 - - gmx:100816082 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1956 4 37151898 37153958 Ssu4g1956 4 37151898 37153958 ECH