Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1952 ATGGCTGGGCAATCAAACCATGAGCTTTCACTGTTTTCAGCGGAGGAGCTTGAGTTCATTGCTGAGGATGAGATCGTGGACATTGTACCCAATCTCAAAATGGGTCCTCTCAATTTCATTTCTGGAGATTTTGGCCCATTTACGCCACAGATTGTTACTCAAGTGCCATTGTGGCTGGCCATTGCTCTCAAGAAGAGAGGCAAGTGCTCCATTCGCCCTCCCCAATGGATGTCTGTTGAGAAGTTGAGTCAAGTTTTGGAGGCAGAGCGAGACTCTCAAGAGATGTCAGATCAATTGCCATTTCATTATGTGGAAATCTCAAGACTTCTTTTTGACCAtgCACGTGACAACATTCCTGATGTATATATGGTGAGATCTCTAATTGAGGACATCAGAAACGTAAGGTTTCATAAAGTTGAAACTGACTTGGAAGCATTTAATGGTCGTACAATTGCTGTTAAgATCAAAAATTTATCTGCAATGGAAGTGAATATTGTTCGTCCATTTATTGGAAGAGCTTTACAGGCATTTTATAAGCACGATAGTCCAGAGTTGATACCAGACCCAGAGAGAGTTTCTGACAGGCGGCCGCAAGTTGTCAACAATGCCCCAAGAAGGCAACTACGAAGATGA 633 0.4265 MAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFTPQIVTQVPLWLAIALKKRGKCSIRPPQWMSVEKLSQVLEAERDSQEMSDQLPFHYVEISRLLFDHARDNIPDVYMVRSLIEDIRNVRFHKVETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKHDSPELIPDPERVSDRRPQVVNNAPRRQLRR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1952 210 CDD GINS_A_psf2 66 182 - -
Ssu4g1952 210 Gene3D - 78 186 - -
Ssu4g1952 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
Ssu4g1952 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Ssu4g1952 210 Gene3D - 12 77 - -
Ssu4g1952 210 SUPERFAMILY PriA/YqbF domain 12 71 - -
Ssu4g1952 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 194 IPR007257 GO:0005634|GO:0006260
Ssu4g1952 210 MobiDBLite consensus disorder prediction 188 210 - -
Ssu4g1952 210 Pfam GINS complex protein 53 162 IPR021151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1952 Ssu-Chr4 37078506 37084847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1952 1 146 Core DNA Replication Machinery Family AT3G12530 69.178 2.05e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1952 K10733 - gmx:100780528 401.749