Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1951 ATGCCGGAAGAAACGACGTCGATCGACTACGTCATGGAGGCGGCATCTGGGCCGCACTTCTCGGGCCTGAGACTGGACGGCCGGCTACCCTCCTCCGCCTCCGCGTCCCCCGCTCACGATTCAACCCTAGCCCCCGATTCCCTCCCCAATCAACCCTTCGTCATAGGCGTTTCGGGAGGTACCGCCTCGGGGAAAACCACCGTGTGCGACATGATCATTCAGCAGCTCCACGATCACCGCGTCGTCCTCGACTCTTTTTATCGCGGGTTGAGACCCGAAGAGTTGGAACGCGTTCACGAGTACAATTTCGACCACcctgATGCTTTTGACACGGAGCAGTTGTTGGAGTGCATGAGGAAGCTCATCAGCGGCCAGAGCGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCTGATAGTTTTCGCCAGTACTCTTTTCTCAGGTCAACTGTCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCACGATCAGGGCGTCCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAGCAGtatgcaaaatttgttaAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGACGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGCACAAAGCTCGGTCAACATGATCTATGCAAAATATATCCAAACGTGTATGTTATTCAGTCTACATTCCAGATAAGGGGGATGCATACATTGATTCGTGACCGAGACATATCAAAgcatgatttcatattttattcagATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTTATCTGCCTTTCACTGAAAAGCAAGTGGTTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGgcattaaaattggaaaaattctGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTTCCCAAGGATATTTCAGAACGGCATGTCTTACTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAATCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGCAAAAGGTTTCCATCATTGAAGATTGTCACATCTGAGATTGACGTTGAATTAAATGAGGAGTATCGGGTTATCCCAGGATTGGGTGAATTTGGTGATCGCTACTTTGGTACCGATGATTGA 1428 0.4489 MPEETTSIDYVMEAASGPHFSGLRLDGRLPSSASASPAHDSTLAPDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMRKLISGQSVHVPIYDFKKHQRSSDSFRQYSFLRSTVSDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1951 475 PRINTS Uridine kinase signature 79 90 - -
Ssu4g1951 475 PRINTS Uridine kinase signature 222 235 - -
Ssu4g1951 475 PRINTS Uridine kinase signature 200 211 - -
Ssu4g1951 475 PRINTS Uridine kinase signature 52 69 - -
Ssu4g1951 475 PRINTS Uridine kinase signature 124 139 - -
Ssu4g1951 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 247 IPR027417 -
Ssu4g1951 475 Gene3D - 258 473 IPR029057 -
Ssu4g1951 475 ProSiteProfiles UvrC family, homology region profile. 160 243 IPR001162 GO:0009381
Ssu4g1951 475 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 30 472 IPR029930 GO:0004849|GO:0044206
Ssu4g1951 475 CDD PRTases_typeI 331 446 IPR000836 -
Ssu4g1951 475 MobiDBLite consensus disorder prediction 23 47 - -
Ssu4g1951 475 Gene3D - 49 257 IPR027417 -
Ssu4g1951 475 PANTHER URIDINE KINASE 30 472 - -
Ssu4g1951 475 Pfam Phosphoribulokinase / Uridine kinase family 54 242 IPR006083 GO:0005524|GO:0016301
Ssu4g1951 475 Pfam Uracil phosphoribosyltransferase 272 473 - -
Ssu4g1951 475 CDD UMPK 54 254 IPR000764 -
Ssu4g1951 475 SUPERFAMILY PRTase-like 257 474 IPR029057 -
Ssu4g1951 475 TIGRFAM udk: uridine kinase 52 254 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1951 Ssu-Chr4 37060809 37075142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1951 1 475 PRT Gene Family AT5G40870 83.231 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1951 K00876 - gmx:100780005 874.389