Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1944 ATGGGAGAGGATTCTAGGGAGTTTGGAGAAAAGGCAAAAATCAACCACAAGATGGAAGATGTTGAAACAGAAGAAGAAATAGACCCAGAAAGCAATTCACTGAATGAGCCACTGCTCAAGAGGAACCGGACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAATACATATTCTTGAAATGGTCACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAATATTTCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTAACGGGTTTCCTATATTTCACGGgcattaatttcattttgacaTTTGTTGCTGCTAttctgtgtgtgtgttttgcaCCCACGGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCTCCAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCCTGGATTTGGGGAAAGAAGGGCCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTGCTAGGCCAGGGAGGCCCTGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCTTCGGGATCTTATTACCTGCGGTGCATCTTCAGGAGTTTGTGCAGCTTTCAGGGCTCCGGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTAGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTTAGCACAgctatggtggtggtggttctCAGGGCGTTCATTGAAATCTGCCATTCTGGAAAATGTGGCCTCTTTGGTGAAGGAGGTCTGATCATGTTTGACGTAAGCAATGTAACAGTGCGGTACCACGTTATGGATATTGTCCCTGTTGTAGTCATTGGAATCATAGGTGGGCTACTGGGAAGCCTTTACAATCACGTGCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAGAATACATAAACTCCTCCTAAGTCTTGCGGTTGCACTCTTCACGTCAGTGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGCAATTTGCCACTTCCAGAGTCAGCCTGCCCCACCAATGGACGATCTggaaatttcaaacaattcaaCTGCCCACCTGGCTTCTACAACGATCTTGCTACTCTGCTGCTTACGACAAATGACGATGCCGTTCGAAACATATTCTCAACTAACACCCCTCAAGAATATCAACCCCTGTCCCTCCTAATTTTCTTTGTACTCTATTGCATATTAGGACTGATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGTTCAGGTTATGGCCGCCTTCTTGGCATCTTCATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCGGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAACCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCACGGAGTAGAAAAAGTAGCCAAAATAGTAGATGTCTTGAAAAACACTGCACATAATGGTTTTCCTGTTATGGATGATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGGGCAACAGAATTGCATGGACTGATTCTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAATGGTTCTtcaaagaaagaaggagaagagaggaCTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCTTTTACAGTGCTCGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCAGTAATTGGGATCTTGACCCGGCAAGATCTGCTGGCCCACAACATTCTAACAGTCTTTCCTCACCTGGCAAAATCTAAGGGCAGAGAAAAGAGGAATTGA 2373 0.4298 MGEDSREFGEKAKINHKMEDVETEEEIDPESNSLNEPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWSLAFLVGLLTGIIATLINLAVENISGYKLLAVLKYIHKERYLTGFLYFTGINFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGAPTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDLRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAMVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVPVVVIGIIGGLLGSLYNHVLHKVLRLYNLINQKGRIHKLLLSLAVALFTSVCQYGLPFLAKCTPCNLPLPESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIFMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGVEKVAKIVDVLKNTAHNGFPVMDDGVVPPVVGQANGATELHGLILRAHLIQALKKKWFFKERRRREDWEVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1944 790 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 CDD ClC_6_like 61 583 - -
Ssu4g1944 790 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu4g1944 790 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu4g1944 790 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu4g1944 790 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu4g1944 790 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu4g1944 790 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu4g1944 790 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Ssu4g1944 790 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 771 - -
Ssu4g1944 790 SUPERFAMILY CBS-domain pair 587 770 IPR046342 -
Ssu4g1944 790 Gene3D - 586 776 IPR046342 -
Ssu4g1944 790 ProSiteProfiles CBS domain profile. 717 783 IPR000644 -
Ssu4g1944 790 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 17 785 - -
Ssu4g1944 790 Pfam CBS domain 719 769 IPR000644 -
Ssu4g1944 790 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g1944 790 SMART cbs_1 720 773 IPR000644 -
Ssu4g1944 790 SMART cbs_1 605 665 IPR000644 -
Ssu4g1944 790 MobiDBLite consensus disorder prediction 1 34 - -
Ssu4g1944 790 Gene3D Clc chloride channel 83 585 - -
Ssu4g1944 790 PANTHER CHLORIDE CHANNEL PROTEIN 17 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1944 Ssu-Chr4 36964356 36968714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1944 3 785 Ion Channels AT3G27170 78.161 0.0 1243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1944 K05016 - gmx:100788620 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1944 4 36964356 36968714 Ssu4g1944 4 36964356 36968714 ECH
Ssu4g1944 4 36964356 36968714 Ssu9g0444 9 22479806 22484075 PCT